Name: Sphingomonas leidyi 247
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130675

Type strain:

Species: Sphingomonas leidyi

Strain Designation: 247

Culture col. no.: DSM 25078, LMG 26658

Strain history: <- H. Chen, DSMZ GmbH, Germany; strain 247

NCBI tax ID(s): 68569 (species)

SI-ID 403675

DSM 25078

Special Collections

DSMZ

Other strains from Sphingomonas leidyi

Section

Sphingomonas leidyi 247 is a bacterium that was isolated from pre-alpine freshwater lake.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas leidyi**
	Full Scientific Name (LPSN)	Sphingomonas leidyi (Poindexter 1964) Chen et al. 2012

	Synonym	Caulobacter leidyi
	Synonym	Caulobacter leidyia

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #21546]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21546]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #21546]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #21546]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21546]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21546]	Sample type/isolated from	pre-alpine freshwater lake
[Ref.: #21546]	Geographic location (country and/or sea, region)	Starnberger See
[Ref.: #21546]	Country	Germany
[Ref.: #21546]	Country ISO 3 Code	DEU
[Ref.: #21546]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Climate	#Cold	#Alpine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN591312 (>99% sequence identity) for Sphingomonas leidyi subclade from Microbeatlas

Aquatic Samples	164
Soil Samples	73
Animal Samples	221
Plant Samples	61
Total Samples	519

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21546]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21546]	Sphingomonas leidyi strain 247 16S ribosomal RNA gene, partial sequence	JN591312	1438	GenBank ENA	68569 tax ID

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GC-content

67.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #21546]

Culture collection no.

DSM 25078, LMG 26658

[Ref.: #89183]

SI-ID 403675

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification and emended description of Caulobacter leidyi as Sphingomonas leidyi comb. nov., and emendation of the genus Sphingomonas.	Chen H, Jogler M, Rohde M, Klenk HP, Busse HJ, Tindall BJ, Sproer C, Overmann J	Int J Syst Evol Microbiol	10.1099/ijs.0.039636-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21546

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25078

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89183

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403675.1 )

* These data were automatically processed and therefore are not curated

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