Sphingomonas leidyi (DSM 4733, ATCC 15260, CIP 106443)

Name: Sphingomonas leidyi (DSM 4733, ATCC 15260, CIP 106443)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14221

Type strain

Strain Designation CB 37

Culture col. no. DSM 4733 ATCC 15260 CIP 106443 VKM B-1368 CB 37

NCBI tax ID(s) 68569

Special Collections DSMZ CIP

Links

Sphingomonas leidyi CB 37 is an obligate aerobe, mesophilic, Gram-negative prokaryote that was isolated from millipede hind gut.

Gram-negative rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 36316

ATCC 15260,CIP 106443,DSM 4733,VKM B-1368,KCTC 12465

@ref 20215

Last LPSN update 2025-12-16 09:50:17

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Species Sphingomonas leidyi

Full scientific name Sphingomonas leidyi (Poindexter 1964) Chen et al. 2012

Synonyms (3)

Caulobacter leidyi
Caulobacter leidyia
Alteristakelama leidyi

BacDive ID	Other strains from **Sphingomonas leidyi** (1)	Type strain
130675	S. leidyi 247, DSM 25078, LMG 26658

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
120576	negative	rod-shaped
125439	negative		97.4
125438	negative		93.476

Pigmentation

@ref	Production	Name
120576		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1739	CAULOBACTER MEDIUM (DSMZ Medium 595)	Medium recipe at MediaDive	Name: CAULOBACTER MEDIUM (DSMZ Medium 595) Composition: Agar 15.0 g/l Bacto peptone 2.0 g/l Yeast extract 1.0 g/l MgSO4 x 7 H2O 0.2 g/l Tap water
1739	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
32970	MEDIUM 341 - for Caulobacter and Brevundimonas		Distilled water make up to (995.000 ml);Magnesium sulphate heptahydrate (0.200 g);Calcium chloride dihydrate (0.100 g);Agar (15.000 g);Yeast extract (1.000 g);Peptone (2.000 g);Vitamin solution - M0655 (5.000 ml)
120576	CIP Medium 341	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
1739	positive	growth	30	mesophilic
32970	positive	growth	30	mesophilic
120576	positive	growth	25-37	mesophilic
120576	negative	growth	10
120576	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
120576	obligate aerobe
125439	obligate aerobe	97.3

Spore formation

@ref	Spore formation	Confidence
125439		95.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
120576	NaCl	positive	growth	0 %
120576	NaCl		growth	2 %
120576	NaCl		growth	4 %
120576	NaCl		growth	6 %
120576	NaCl		growth	8 %
120576	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
120576	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
120576	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
120576	17632 ChEBI	nitrate	-	reduction
120576	17632 ChEBI	nitrate	-	respiration
120576	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
120576	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120576	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120576	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120576	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
120576	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
120576	caseinase	-	3.4.21.50
120576	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
120576	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120576	gelatinase	-
120576	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
120576	lipase	-
68382	lipase (C 14)	-		from API zym
120576	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120576	ornithine decarboxylase	-	4.1.1.17
120576	oxidase	-
120576	protease	-
68382	trypsin	-	3.4.21.4	from API zym
120576	tryptophan deaminase	-
120576	tween esterase	-
120576	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120576	-	+	+	+	-	+	+	+	-	-	+	+	-	-	+	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
120576	not determinedn.d.	-	-	-	+/-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	+	+	-	-	-	+	-	-	-	+/-	-	-	+	-	-	-	-	+/-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
120576	not determinedn.d.	+	-	-	+	+	-	-	-	-	+	+	-	-	-	-	+	+	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Arthropoda
#Host Body-Site	#Gastrointestinal tract

Isolation

@ref	Sample type
1739	millipede hind gut
120576	Millipede hind gut

Taxonmaps

69479

Global distribution of 16S sequence AJ227812 (>99% sequence identity) for Sphingomonas leidyi subclade from Microbeatlas

Aquatic Samples	164
Soil Samples	73
Animal Samples	221
Plant Samples	61
Total Samples	519

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1739	1	Risk group (German classification) According to TRBA 466
120576	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1176194v1 assembly for Sphingomonas leidyi DSM 4733	scaffold	GCA_011761945	68569.3	2828301124	68569	75.6

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Caulobacter leidyia gene for 16S rRNA, partial sequence, strain: ATCC15260	AB008391	1400	68569
20218	Caulobacter leidyi 16S rRNA gene	AJ007806	1393	68569
1739	Caulobacter leidyi DNA for 16S ribosomal RNA, strain ATCC 15260(T)	AJ227812	1442	68569
124043	Sphingomonas leidyi partial 16S rRNA gene, isolate BII-B3	LT548963	1293	68569

GC content

@ref	GC-content (mol%)	Method
1739	67	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sphingomonas leidyi DSM 4733
NCBI: GCA_011761945

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.90	no
125439	motility	BacteriaNetⓘ	yes	68.60	no
125439	gram_stain	BacteriaNetⓘ	negative	97.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphingomonas leidyi DSM 4733
NCBI: GCA_011761945.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	93.48	no
125438	anaerobic	anaerobicⓘ	no	95.36	yes
125438	aerobic	aerobicⓘ	yes	87.47	yes
125438	spore-forming	spore-formingⓘ	no	86.84	no
125438	thermophilic	thermophileⓘ	no	97.08	no
125438	flagellated	motile2+ⓘ	yes	70.16	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	An aldo-keto reductase is responsible for Fusarium toxin-degrading activity in a soil Sphingomonas strain.	He WJ, Zhang L, Yi SY, Tang XL, Yuan QS, Guo MW, Wu AB, Qu B, Li HP, Liao YC.	Sci Rep	10.1038/s41598-017-08799-w	2017
	A new selective culture medium for isolation of Burkholderia cepacia complex in pharmaceutical industry.	Yu M, Wang S, Zhong Y, Yuan L, An L, Feng D, Liu Z, Ma S.	Front Microbiol	10.3389/fmicb.2025.1631983	2025
	Niche formation and metabolic interactions contribute to stable diversity in a spatially structured cyanobacterial community.	Duxbury SJN, Raguideau S, Cremin K, Richards L, Medvecky M, Rosko J, Coates M, Randall K, Chen J, Quince C, Soyer OS.	ISME J	10.1093/ismejo/wraf126	2025
Pathogenicity	Heterorhabditis bacteriophora symbiotic and axenic nematodes modify the Drosophila melanogaster larval microbiome.	Mallick S, Pavloudi C, Saw J, Eleftherianos I.	Front Microbiol	10.3389/fmicb.2025.1598221	2025
	Bioleaching of copper sulfides using mixed microorganisms and its community structure succession in the presence of seawater.	Chen W, Yin S, Wu A, Wang L, Chen X.	Bioresour Technol	10.1016/j.biortech.2019.122453	2020
Genetics	Impact of scented candle use on indoor air quality and airborne microbiome.	Yun H, Seo JH, Kim YG, Yang J.	Sci Rep	10.1038/s41598-025-95010-0	2025
Phylogeny	Human nasal microbiota shifts in healthy and chronic respiratory disease conditions.	Konovalovas A, Armalyte J, Klimkaite L, Liveikis T, Jonaityte B, Danila E, Bironaite D, Mieliauskaite D, Bagdonas E, Aldonyte R.	BMC Microbiol	10.1186/s12866-024-03294-5	2024
	Microbiological Quality of Deer Meat Treated with Essential Oil Litsea cubeba.	Kunova S, Sendra E, Hascik P, Vukovic NL, Vukic MD, Hsouna AB, Mnif W, Kacaniova M.	Animals (Basel)	10.3390/ani12182315	2022
	Maize edible-legumes intercropping systems for enhancing agrobiodiversity and belowground ecosystem services.	Jalloh AA, Mutyambai DM, Yusuf AA, Subramanian S, Khamis F.	Sci Rep	10.1038/s41598-024-64138-w	2024
	[Next-generation Sequencing Analysis of Bacterial Flora in Bovine Prototheca Mastitic Milk].	Kano R, Kobayashi Y, Nishikawa A, Murata R, Itou T, Ito T, Suzuki K, Kamata H.	Med Mycol J	10.3314/mmj.18-00004	2018
	Evaluation of Quality of Nitrite-Free Fermented Roe Deer (Capreolus capreolus) Sausage with Addition of Ascorbic Acid and Reduced NaCl.	Wojciak KM, Keska P, Kacaniova M, Cmikova N, Solska E, Ogorek A.	Foods	10.3390/foods13233823	2024
Pathogenicity	Characterisation of Mid-Gestation Amniotic Fluid Cytokine and Bacterial DNA Profiles in Relation to Pregnancy Outcome in a Small Australian Cohort.	Stinson LF, Berman Y, Li S, Keelan JA, Dickinson JE, Doherty DA, Newnham JP, Payne MS.	Microorganisms	10.3390/microorganisms11071698	2023
	Unveiling Concealed Functions of Endosymbiotic Bacteria Harbored in the Ascomycete Stachylidium bicolor.	Almeida C, Silva Pereira C, Gonzalez-Menendez V, Bills G, Pascual J, Sanchez-Hidalgo M, Kehraus S, Genilloud O.	Appl Environ Microbiol	10.1128/aem.00660-18	2018
	Paenibacillus spp infection among infants with postinfectious hydrocephalus in Uganda: an observational case-control study.	Morton SU, Hehnly C, Burgoine K, Ssentongo P, Ericson JE, Kumar MS, Hagmann C, Fronterre C, Smith J, Movassagh M, Streck N, Bebell LM, Bazira J, Kumbakumba E, Bajunirwe F, Mulondo R, Mbabazi-Kabachelor E, Nsubuga BK, Natukwatsa D, Nalule E, Magombe J, Erickson T, Ngonzi J, Ochora M, Olupot-Olupot P, Onen J, Ssenyonga P, Mugamba J, Warf BC, Kulkarni AV, Lane J, Whalen AJ, Zhang L, Sheldon K, Meier FA, Kiwanuka J, Broach JR, Paulson JN, Schiff SJ.	Lancet Microbe	10.1016/s2666-5247(23)00106-4	2023
Pathogenicity	Salivary Microbiota and Host-Inflammatory Responses in Periodontitis Affected Individuals With and Without Rheumatoid Arthritis.	Eriksson K, Lundmark A, Delgado LF, Hu YOO, Fei G, Lee L, Fei C, Catrina AI, Jansson L, Andersson AF, Yucel-Lindberg T.	Front Cell Infect Microbiol	10.3389/fcimb.2022.841139	2022
Metabolism	PvdM of fluorescent pseudomonads is required for the oxidation of ferribactin by PvdP in periplasmic pyoverdine maturation.	Sugue MF, Burdur AN, Ringel MT, Drager G, Bruser T.	J Biol Chem	10.1016/j.jbc.2022.102201	2022
	Phosphate starvation decouples cell differentiation from DNA replication control in the dimorphic bacterium Caulobacter crescentus.	Hallgren J, Koonce K, Felletti M, Mortier J, Turco E, Jonas K.	PLoS Genet	10.1371/journal.pgen.1010882	2023
Metabolism	Isolation and characterization of Sphingomonadaceae from fouled membranes.	de Vries HJ, Beyer F, Jarzembowska M, Lipinska J, van den Brink P, Zwijnenburg A, Timmers PHA, Stams AJM, Plugge CM.	NPJ Biofilms Microbiomes	10.1038/s41522-018-0074-1	2019
Phylogeny	Microbiota of cow's milk; distinguishing healthy, sub-clinically and clinically diseased quarters.	Oikonomou G, Bicalho ML, Meira E, Rossi RE, Foditsch C, Machado VS, Teixeira AG, Santisteban C, Schukken YH, Bicalho RC.	PLoS One	10.1371/journal.pone.0085904	2014
Phylogeny	Reclassification and emended description of Caulobacter leidyi as Sphingomonas leidyi comb. nov., and emendation of the genus Sphingomonas.	Chen H, Jogler M, Rohde M, Klenk HP, Busse HJ, Tindall BJ, Sproer C, Overmann J	Int J Syst Evol Microbiol	10.1099/ijs.0.039636-0	2012
Phylogeny	Sphingomonas rustica sp. nov. and Sphingomonas agrestis sp. nov., novel carotenoid-producing bacterial species isolated from farm soil.	Lee H, Kim I, Park S, Woo H, Yook S, Seo T.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006551	2024
Phylogeny	Sphingomonas crusticola sp. nov., isolated from biological soil crusts.	Zhang K, Tang K, Feng F, Yuan B, Zhang X, Meng J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002074	2017
Phylogeny	Sphingomonas gei sp. nov., isolated from roots of Geum aleppicum.	Zhu L, Si M, Li C, Xin K, Chen C, Shi X, Huang R, Zhao L, Shen X, Zhang L	Int J Syst Evol Microbiol	10.1099/ijs.0.000074	2015
Phylogeny	Sphingomonas aerophila sp. nov. and Sphingomonas naasensis sp. nov., isolated from air and soil, respectively.	Kim SJ, Moon JY, Lim JM, Ahn JH, Weon HY, Ahn TY, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.055269-0	2013
Phylogeny	Prosthecate sphingomonads: proposal of Sphingomonas canadensis sp. nov.	Abraham WR, Estrela AB, Rohde M, Smit J, Vancanneyt M	Int J Syst Evol Microbiol	10.1099/ijs.0.048678-0	2013
Phylogeny	Sphingomonas cannabina sp. nov., isolated from Cannabis sativa L. 'Cheungsam'.	Jeon D, Jiang L, Peng Y, Seo J, Li Z, Park SH, Jeong RD, Park SJ, Jeong JC, Lee J	Int J Syst Evol Microbiol	10.1099/ijsem.0.005566	2022

References

#1739	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4733
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#32970	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120576	Collection of Institut Pasteur ; Curators of the CIP; CIP 106443
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingomonas leidyi (DSM 4733, ATCC 15260, CIP 106443)

Name and taxonomic classification

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Culture and growth conditions

Culture medium

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Physiology and metabolism

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Halophily

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Genome browser: GCA_011761945

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