Name: Zoogloea oleivorans Buc
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130656

Type strain:

Species: Zoogloea oleivorans

Strain Designation: Buc

Culture col. no.: DSM 28387, NCAIM B 02570

Strain history: <- A. Táncsics, Szent István Univ., Gödöllö, Hungary; Buc <- M. Farkas

NCBI tax ID(s): 1552750 (species)

SI-ID 399834

DSM 28387

Section

Zoogloea oleivorans Buc is a mesophilic, motile bacterium that was isolated from biofilm on the surface of a biofilter for petroleum hydrocarbon removal.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Zoogloeaceae*
	Genus	*Zoogloea*
	Species	**Zoogloea oleivorans**
	Full Scientific Name (LPSN)	Zoogloea oleivorans Farkas et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %99.017

Multimedia content

[Ref.: #21869]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21869]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21869]			growth	28 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.989

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21869]	Sample type/isolated from	biofilm on the surface of a biofilter for petroleum hydrocarbon removal
[Ref.: #21869]	Country	Hungary
[Ref.: #21869]	Country ISO 3 Code	HUN
[Ref.: #21869]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Bioremediation	#Biofilter
#Engineered	#Industrial	#Machines and devices
#Environmental	#Biofilm	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF667502 (>99% sequence identity) for Zoogloea oleivorans subclade from Microbeatlas

Aquatic Samples	1495
Soil Samples	171
Animal Samples	212
Plant Samples	16
Total Samples	1894

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21869]	Zoogloea oleivorans strain Buc 16S ribosomal RNA gene, partial sequence	KF667502	1433	ENA	1552750 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Zoogloea oleivorans Buc	GCA_008107625	scaffold	GenBank	1552750 tax ID	*
[Ref.: #66792]	Zoogloea oleivorans Buc	2889975126	draft	JGI IMG/M	1552750 tax ID	*

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GC-content

63.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Zoogloea oleivorans Buc NCBI: GCA_008107625.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Zoogloea oleivorans Buc NCBI: GCA_008107625.1
[Ref.: #69480]	motile	yes	90.332	no
[Ref.: #69480]	flagellated	yes	85.582	no
[Ref.: #69480]	gram-positive	no	99.175	no
[Ref.: #69480]	anaerobic	no	90.25	no
[Ref.: #69480]	aerobic	yes	52.318	no
[Ref.: #69480]	halophile	no	95.712	no
[Ref.: #69480]	spore-forming	no	95.651	no
[Ref.: #69480]	glucose-util	no	72.197	no
[Ref.: #69480]	thermophile	no	98.933	no
[Ref.: #69480]	glucose-ferment	no	90.17	no

Availability in culture collections External links

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Culture collection no.

DSM 28387, NCAIM B 02570

[Ref.: #89167]

SI-ID 399834

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Zoogloea oleivorans sp. nov., a floc-forming, petroleum hydrocarbon-degrading bacterium isolated from biofilm.	Farkas M, Tancsics A, Kriszt B, Benedek T, Toth EM, Keki Z, Veres PG, Szoboszlay S	Int J Syst Evol Microbiol	10.1099/ijs.0.068486-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21869

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28387

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89167

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399834.1 )

* These data were automatically processed and therefore are not curated

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