Strain identifier
BacDive ID: 130656
Type strain: 
Species: Zoogloea oleivorans
Strain Designation: Buc
Strain history: <- A. Táncsics, Szent István Univ., Gödöllö, Hungary; Buc <- M. Farkas
NCBI tax ID(s): 1552750 (species)
version 8.1 (current version)
General
@ref: 21869
BacDive-ID: 130656
DSM-Number: 28387
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Zoogloea oleivorans Buc is a mesophilic, motile bacterium that was isolated from biofilm on the surface of a biofilter for petroleum hydrocarbon removal.
NCBI tax id
- NCBI tax id: 1552750
- Matching level: species
strain history
- @ref: 21869
- history: <- A. Táncsics, Szent István Univ., Gödöllö, Hungary; Buc <- M. Farkas
doi: 10.13145/bacdive130656.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Rhodocyclales
- family: Zoogloeaceae
- genus: Zoogloea
- species: Zoogloea oleivorans
- full scientific name: Zoogloea oleivorans Farkas et al. 2015
@ref: 21869
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Rhizobiales
family: Zoogloeaceae
genus: Zoogloea
species: Zoogloea oleivorans
full scientific name: Zoogloea oleivorans Farkas et al. 2015
strain designation: Buc
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 99.017 | |
| 69480 | 100 | negative |
multimedia
- @ref: 21869
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_28387.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 21869 | R2A MEDIUM (DSMZ Medium 830) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf | |
| 21869 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
culture temp
- @ref: 21869
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.989 |
Isolation, sampling and environmental information
isolation
- @ref: 21869
- sample type: biofilm on the surface of a biofilter for petroleum hydrocarbon removal
- country: Hungary
- origin.country: HUN
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Bioremediation | #Biofilter |
| #Engineered | #Industrial | #Machines and devices |
| #Environmental | #Biofilm |
taxonmaps
- @ref: 69479
- File name: preview.99_49176.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_22226;97_27767;98_35376;99_49176&stattab=map
- Last taxonomy: Zoogloea oleivorans subclade
- 16S sequence: KF667502
- Sequence Identity:
- Total samples: 1894
- soil counts: 171
- aquatic counts: 1495
- animal counts: 212
- plant counts: 16
Safety information
risk assessment
- @ref: 21869
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21869
- description: Zoogloea oleivorans strain Buc 16S ribosomal RNA gene, partial sequence
- accession: KF667502
- length: 1433
- database: ena
- NCBI tax ID: 1552750
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Zoogloea oleivorans Buc | GCA_008107625 | scaffold | ncbi | 1552750 |
| 66792 | Zoogloea oleivorans Buc | 2889975126 | draft | img | 1552750 |
GC content
- @ref: 21869
- GC-content: 63.2
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 90.332 | no |
| flagellated | yes | 85.582 | no |
| gram-positive | no | 99.175 | no |
| anaerobic | no | 90.25 | no |
| aerobic | yes | 52.318 | no |
| halophile | no | 95.712 | no |
| spore-forming | no | 95.651 | no |
| glucose-util | no | 72.197 | no |
| thermophile | no | 98.933 | no |
| glucose-ferment | no | 90.17 | no |
External links
@ref: 21869
culture collection no.: DSM 28387, NCAIM B 02570
straininfo link
- @ref: 89167
- straininfo: 399834
literature
- topic: Phylogeny
- Pubmed-ID: 25342113
- title: Zoogloea oleivorans sp. nov., a floc-forming, petroleum hydrocarbon-degrading bacterium isolated from biofilm.
- authors: Farkas M, Tancsics A, Kriszt B, Benedek T, Toth EM, Keki Z, Veres PG, Szoboszlay S
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.068486-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, Biodegradation, Environmental, *Biofilms, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hungary, Hydrocarbons/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Petroleum/*microbiology, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry, Zoogloea/*classification/genetics/isolation & purification
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21869 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28387 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28387) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 89167 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399834.1 |