Stutzerimonas zhaodongensis (DSM 27559, ACCC 06362, NEAU-ST5-21)

Name: Stutzerimonas zhaodongensis (DSM 27559, ACCC 06362, NEAU-ST5-21)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130579

Type strain

Strain Designation NEAU-ST5-21

Culture col. no. DSM 27559 ACCC 06362 NEAU-ST5-21

NCBI tax ID(s) 1176257

Special Collections DSMZ

Links

Stutzerimonas zhaodongensis NEAU-ST5-21 is a mesophilic prokaryote that was isolated from saline-alkaline soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 400221

DSM 27559

@ref 20215

Last LPSN update 2025-12-16 10:01:02

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Stutzerimonas

Species Stutzerimonas zhaodongensis

Full scientific name Stutzerimonas zhaodongensis (Zhang et al. 2015) Gomila et al. 2022

Synonyms (1)

Pseudomonas zhaodongensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	100

Multimedia

@ref:	22029
multimedia content:	DSM_27559.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_27559.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22029	HIGH MAGNESIUM MEDIUM (DSMZ Medium 1506)		Medium recipe at MediaDive	Name: HIGH MAGNESIUM MEDIUM (DSMZ Medium 1506) Composition: MgSO4 x 7 H2O 20.0 g/l Yeast extract 10.0 g/l Tryptone 5.0 g/l Casein hydrolysate 5.0 g/l Trisodium citrate x 2 H2O 3.0 g/l KCl 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22029	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.482

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
22029	+	-	-	+	-	+	-	-	+	+	-	+	-	+	+	+	-	+	+	-	+
22029	+	-	+	+	-	-	-	-	+	+	-	+	-	+	+	+	-	+	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Alkaline	-
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22029	saline-alkaline soil	Heilongjiang Province, Songnen Plain, Zhaodong City (46° 03' 56.62'' N 125° 54' 12.48'' E)	China	CHN	Asia	46.0657	125.903 46.0657/125.903

Taxonmaps

69479

Global distribution of 16S sequence JQ762275 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	64
Soil Samples	62
Animal Samples	92
Plant Samples	25
Total Samples	243

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22029	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM369636v1 assembly for Stutzerimonas zhaodongensis NEAU-ST5-21	contig	GCA_003696365	1176257.6	2990200787	1176257	74.17

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22029	Stutzerimonas zhaodongensis strain NEAU-ST5-21 16S ribosomal RNA gene, partial sequence	JQ762275	1403		1176257

GC content

@ref	GC-content (mol%)	Method
22029	65	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas zhaodongensis NEAU-ST5-21
NCBI: GCA_003696365.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	97.66	no
125438	aerobic	aerobicⓘ	yes	90.48	no
125438	spore-forming	spore-formingⓘ	no	85.51	no
125438	thermophilic	thermophileⓘ	no	99.36	yes
125438	flagellated	motile2+ⓘ	yes	89.99	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	The identification and performance assessment of dominant bacterial species during linear alkylbenzene sulfonate (LAS)-biodegradation in a bioelectrochemical system.	Askari A, Vahabzadeh F, Mardanpour MM	Bioprocess Biosyst Eng	10.1007/s00449-021-02629-0	2021
Phylogeny	Pseudomonas lopnurensis sp. nov., an endophytic bacterium isolated from Populus euphratica at the ancient Ugan river.	Mamtimin T, Anwar N, Abdurahman M, Kurban M, Rozahon M, Mamtimin H, Hamood B, Rahman E, Wu M	Antonie Van Leeuwenhoek	10.1007/s10482-021-01524-8	2021
Phylogeny	Pseudomonas zhaodongensis sp. nov., isolated from saline and alkaline soils.	Zhang L, Pan Y, Wang K, Zhang X, Zhang C, Zhang S, Fu X, Jiang J	Int J Syst Evol Microbiol	10.1099/ijs.0.000057	2015
Phylogeny	Pseudomonas marianensis sp. nov., a marine bacterium isolated from deep-sea sediments of the Mariana Trench.	Yang Y, Gao Y, Liu Y, Liu B, Wang D, Xu Y, Wei Y	Arch Microbiol	10.1007/s00203-022-03250-9	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22029	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27559
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Stutzerimonas zhaodongensis (DSM 27559, ACCC 06362, NEAU-ST5-21)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003696365

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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