Paenibacillus senegalensis (DSM 25958, CSUR P157, JC66)

Name: Paenibacillus senegalensis (DSM 25958, CSUR P157, JC66)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130511

Type strain

Strain Designation JC66

Culture col. no. DSM 25958 CSUR P157 JC66

NCBI tax ID(s) 1465766

Special Collections DSMZ

History DSMZ <- J.-C. Lagier, Timone Hospital, Marseille, France; JC66

Links

Paenibacillus senegalensis JC66 is a bacterium that was isolated from stool of a healthy patient.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398788

DSM 25958

@ref 20215

Last LPSN update 2026-05-29 08:37:23

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus senegalensis

Full scientific name Paenibacillus senegalensis Mishra et al. 2015

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21713	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
21713	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	95.168

Spore formation

@ref	Spore formation	Confidence
125439		91.54

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
21713	stool of a healthy patient	Homo sapiens	Senegal	SEN	Africa

Taxonmaps

69479

Global distribution of 16S sequence JF824808 (>99% sequence identity) for Paenibacillus senegalensis subclade from Microbeatlas

Aquatic Samples	5
Soil Samples	28
Animal Samples	4
Plant Samples	14
Total Samples	51

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21713	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM28551v1 assembly for Paenibacillus senegalensis JC66 type strain: JC66	scaffold	GCA_000285515	1033743.3	2547132139	1033743	37.6

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21713	Paenibacillus senegalensis JC66 16S ribosomal RNA gene, partial sequence	JF824808	1434		1033743

GC content

@ref	GC-content (mol%)	Method
21713	48.2	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM28551v1 assembly for Paenibacillus senegalensis JC66 type strain: JC66
NCBI: GCA_000285515

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	95.17	no
125439	motility	BacteriaNetⓘ	yes	75.22	no
125439	gram_stain	BacteriaNetⓘ	variable	71.25	no
125439	spore_formation	BacteriaNetⓘ	yes	91.54	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Non-contiguous finished genome sequence and description of Paenibacillus senegalensis sp. nov.	Mishra AK, Lagier JC, Rivet R, Raoult D, Fournier PE.	Stand Genomic Sci	10.4056/sigs.3056450	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21713	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25958
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus senegalensis (DSM 25958, CSUR P157, JC66)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000285515

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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