Strain identifier

BacDive ID: 130511

Type strain: Yes

Species: Paenibacillus senegalensis

Strain Designation: JC66

Strain history: <- J.-C. Lagier, Timone Hospital, Marseille, France; JC66

NCBI tax ID(s): 1465766 (species)

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General

@ref: 21713

BacDive-ID: 130511

DSM-Number: 25958

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Paenibacillus senegalensis JC66 is a mesophilic bacterium that was isolated from stool of a healthy patient.

NCBI tax id

  • NCBI tax id: 1465766
  • Matching level: species

strain history

  • @ref: 21713
  • history: <- J.-C. Lagier, Timone Hospital, Marseille, France; JC66

doi: 10.13145/bacdive130511.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus senegalensis
  • full scientific name: Paenibacillus senegalensis Mishra et al. 2015

@ref: 21713

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus senegalensis

full scientific name: Paenibacillus senegalensis Mishra et al. 2015

strain designation: JC66

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 21713
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 21713
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 21713
  • sample type: stool of a healthy patient
  • country: Senegal
  • origin.country: SEN
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3681.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_1903;97_2287;98_2814;99_3681&stattab=map
  • Last taxonomy: Paenibacillus senegalensis subclade
  • 16S sequence: JF824808
  • Sequence Identity:
  • Total samples: 51
  • soil counts: 28
  • aquatic counts: 5
  • animal counts: 4
  • plant counts: 14

Safety information

risk assessment

  • @ref: 21713
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21713
  • description: Paenibacillus senegalensis JC66 16S ribosomal RNA gene, partial sequence
  • accession: JF824808
  • length: 1434
  • database: ena
  • NCBI tax ID: 1033743

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenibacillus senegalensis JC662547132139draftimg1033743
66792Paenibacillus senegalensis JC66GCA_000285515scaffoldncbi1033743

GC content

  • @ref: 21713
  • GC-content: 48.2
  • method: sequence analysis

External links

@ref: 21713

culture collection no.: DSM 25958, CSUR P157

straininfo link

  • @ref: 89034
  • straininfo: 398788

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21713Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25958Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25958)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89034Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398788.1