Name: Reinekea aestuarii DSM 29881
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130500

Type strain:

Species: Reinekea aestuarii

Culture col. no.: DSM 29881, IMCC 4489, KCCM 42938, KCTC 22813, NBRC 106079

Strain history: <- JC Cho, Inha Univ.

NCBI tax ID(s): 672157 (species)

SI-ID 399960

DSM 29881

Section

Reinekea aestuarii DSM 29881 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from sediment from a tidal flat.

Gram-negative
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Saccharospirillaceae*
	Genus	*Reinekea*
	Species	**Reinekea aestuarii**
	Full Scientific Name (LPSN)	Reinekea aestuarii Choi and Cho 2010

Information on morphological and physiological properties Morphology

[Ref.: #29686]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #29686]	Cell length	1.2-2.5 µm

[Ref.: #29686]	Cell width	0.4-0.5 µm

[Ref.: #29686]	Cell shape	rod-shaped

[Ref.: #29686]	Motility	no

[Ref.: #29686]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21755]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #21755]

Culture medium growth

[Ref.: #21755]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21755]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21755]	growth	25 °C
[Ref.: #29686]	growth	15-42 °C
[Ref.: #29686]	optimum	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #21755]	Temperature range	mesophilic
[Ref.: #29686]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29686]			optimum	06-08
[Ref.: #29686]			growth	05-12

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29686]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29686]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29686]		NaCl		growth	0.5-10	%
[Ref.: #29686]		NaCl		optimum	02-05	%

[Ref.: #29686]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29686]	alanine ChEBI	+	carbon source
[Ref.: #29686]	dextrin ChEBI	+	carbon source
[Ref.: #29686]	esculin ChEBI	+	hydrolysis
[Ref.: #29686]	galactose ChEBI	+	carbon source
[Ref.: #29686]	glutamate ChEBI	+	carbon source
[Ref.: #29686]	glycogen ChEBI	+	carbon source
[Ref.: #29686]	lactose ChEBI	+	carbon source
[Ref.: #29686]	mannose ChEBI	+	carbon source
[Ref.: #29686]	melibiose ChEBI	+	carbon source
[Ref.: #29686]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29686]	raffinose ChEBI	+	carbon source
[Ref.: #29686]	succinate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29686]	acid phosphatase	+	3.1.3.2
[Ref.: #29686]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29686]	catalase	+	1.11.1.6
[Ref.: #29686]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21755]	Sample type/isolated from	sediment from a tidal flat
[Ref.: #21755]	Geographic location (country and/or sea, region)	Incheon, Dong-Gum Island
[Ref.: #21755]	Country	Republic of Korea
[Ref.: #21755]	Country ISO 3 Code	KOR
[Ref.: #21755]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From tidal flat sediment
[Ref.: #67771]	Geographic location (country and/or sea, region)	the Yellow Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21755]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21755]	Reinekea aestuarii strain IMCC 4489 16S ribosomal RNA gene, partial sequence	GQ456131	1466	ENA	672157 tax ID

[Ref.: #29686]	GC-content	51.3-51.5 mol%
[Ref.: #21755]	GC-content	51.3 mol%

Availability in culture collections External links

[Ref.: #21755]

Culture collection no.

DSM 29881, IMCC 4489, KCCM 42938, KCTC 22813, NBRC 106079

[Ref.: #89023]

SI-ID 399960

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reinekea thalattae sp. nov., a New Species of the Genus Reinekea Isolated from Surface Seawater in Sehwa Beach.	Kim I, Chhetri G, Kim J, Kang M, Seo T	Curr Microbiol	10.1007/s00284-020-02224-8	2020	*
Phylogeny	Reinekea marina sp. nov., isolated from seawater, and emended description of the genus Reinekea.	Kang H, Kim H, Joung Y, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000720	2015	*
Phylogeny	Reinekea aestuarii sp. nov., isolated from tidal flat sediment.	Choi A, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.018739-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21755

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29881

#29686

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26071 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#89023

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399960.1 )

#26071

IJSEM 2813 2010 ( DOI 10.1099/ijs.0.018739-0 , PubMed 20081022 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Reinekea aestuarii in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF