Name: Reinekea blandensis DSM 29825
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130499

Type strain:

Species: Reinekea blandensis

Culture col. no.: DSM 29825, CCUG 52066, CECT 7120, MED 297

Strain history: <- CCUG; CCUG 52066 <- J. Pinhassi, Dept. Biology and Environmental Sci., Univ. Kalmar, Sweden; MED297

NCBI tax ID(s): 374838 (species)

SI-ID 311000

CCUG 52066, CECT 7120, KCTC 22629, DSM 29825

Section

Reinekea blandensis DSM 29825 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from surface water Bay of Blanes in the north-western Mediterranean Sea.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Saccharospirillaceae*
	Genus	*Reinekea*
	Species	**Reinekea blandensis**
	Full Scientific Name (LPSN)	Reinekea blandensis Pinhassi et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32185]	Gram stain	negative

[Ref.: #32185]	Cell length	2 µm

[Ref.: #32185]	Cell width	0.5 µm

[Ref.: #32185]	Cell shape	rod-shaped

[Ref.: #32185]	Motility	yes

[Ref.: #32185]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21754]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #21754]

Culture medium growth

[Ref.: #21754]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21754]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21754]	growth	28 °C
[Ref.: #32185]	growth	15-42 °C
[Ref.: #32185]	optimum	28.5 °C
[Ref.: #59418]	growth	25 °C

[Ref.: #21754]	Temperature range	mesophilic
[Ref.: #32185]	Temperature range	mesophilic
[Ref.: #59418]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32185]	Oxygen tolerance	aerobe
[Ref.: #59418]	Oxygen tolerance	aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32185]	acetate ChEBI	+	carbon source
[Ref.: #32185]	arabinose ChEBI	+	carbon source
[Ref.: #32185]	arginine ChEBI	+	carbon source
[Ref.: #32185]	cellobiose ChEBI	+	carbon source
[Ref.: #32185]	citrate ChEBI	+	carbon source
[Ref.: #32185]	fructose ChEBI	+	carbon source
[Ref.: #32185]	galactose ChEBI	+	carbon source
[Ref.: #32185]	gluconate ChEBI	+	carbon source
[Ref.: #32185]	glucose ChEBI	+	carbon source
[Ref.: #32185]	glutamate ChEBI	+	carbon source
[Ref.: #32185]	glycerol ChEBI	+	carbon source
[Ref.: #32185]	lactate ChEBI	+	carbon source
[Ref.: #32185]	lactose ChEBI	+	carbon source
[Ref.: #32185]	leucine ChEBI	+	carbon source
[Ref.: #32185]	malate ChEBI	+	carbon source
[Ref.: #32185]	maltose ChEBI	+	carbon source
[Ref.: #32185]	mannitol ChEBI	+	carbon source
[Ref.: #32185]	mannose ChEBI	+	carbon source
[Ref.: #32185]	melibiose ChEBI	+	carbon source
[Ref.: #32185]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32185]	ornithine ChEBI	+	carbon source
[Ref.: #32185]	propionate ChEBI	+	carbon source
[Ref.: #32185]	pyruvate ChEBI	+	carbon source
[Ref.: #32185]	salicin ChEBI	+	carbon source
[Ref.: #32185]	succinate ChEBI	+	carbon source
[Ref.: #32185]	sucrose ChEBI	+	carbon source
[Ref.: #32185]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32185]		catalase	+	1.11.1.6
[Ref.: #32185]		cytochrome oxidase	+	1.9.3.1

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	100	14 of 14
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	alanine metabolism	82.76	24 of 29
[Ref.: #66794]	pyrimidine metabolism	82.22	37 of 45
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	vitamin K metabolism	80	4 of 5
[Ref.: #66794]	methylglyoxal degradation	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	lipid A biosynthesis	77.78	7 of 9
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	purine metabolism	75.53	71 of 94
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	peptidoglycan biosynthesis	73.33	11 of 15
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	lipid metabolism	70.97	22 of 31
[Ref.: #66794]	tryptophan metabolism	68.42	26 of 38
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	degradation of pentoses	64.29	18 of 28
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	pentose phosphate pathway	63.64	7 of 11
[Ref.: #66794]	oxidative phosphorylation	62.64	57 of 91
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	arginine metabolism	62.5	15 of 24
[Ref.: #66794]	histidine metabolism	62.07	18 of 29
[Ref.: #66794]	vitamin B1 metabolism	61.54	8 of 13
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	bacilysin biosynthesis	60	3 of 5
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	heme metabolism	57.14	8 of 14
[Ref.: #66794]	tyrosine metabolism	57.14	8 of 14
[Ref.: #66794]	lysine metabolism	57.14	24 of 42
[Ref.: #66794]	polyamine pathway	56.52	13 of 23
[Ref.: #66794]	4-hydroxymandelate degradation	55.56	5 of 9
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	methionine metabolism	53.85	14 of 26
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	3-phenylpropionate degradation	46.67	7 of 15
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	phenol degradation	45	9 of 20
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	degradation of sugar alcohols	37.5	6 of 16
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	vitamin B12 metabolism	29.41	10 of 34
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	degradation of sugar acids	28	7 of 25
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	23.53	4 of 17
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21754]	Sample type/isolated from	surface water Bay of Blanes in the north-western Mediterranean Sea
[Ref.: #21754]	Country	Spain
[Ref.: #21754]	Country ISO 3 Code	ESP
[Ref.: #21754]	Continent	Europe

[Ref.: #59418]	Sample type/isolated from	Seawater surface
[Ref.: #59418]	Sampling date	2001-11-13
[Ref.: #59418]	Geographic location (country and/or sea, region)	NW Mediterranean Sea,Bay of Blanes
[Ref.: #59418]	Country	Spain
[Ref.: #59418]	Country ISO 3 Code	ESP
[Ref.: #59418]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ403810 (>99% sequence identity) for Reinekea blandensis from Microbeatlas

Aquatic Samples	772
Soil Samples	49
Animal Samples	20
Plant Samples	13
Total Samples	854

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21754]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21754]	Reinekea blandensis MED297 16S ribosomal RNA gene, partial sequence	DQ403810	1530	ENA	314283 tax ID

[Ref.: #32185]

GC-content

52.4 mol%

Availability in culture collections External links

[Ref.: #21754]

Culture collection no.

DSM 29825, CCUG 52066, CECT 7120, MED 297

[Ref.: #89022]

SI-ID 311000

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reinekea thalattae sp. nov., a New Species of the Genus Reinekea Isolated from Surface Seawater in Sehwa Beach.	Kim I, Chhetri G, Kim J, Kang M, Seo T	Curr Microbiol	10.1007/s00284-020-02224-8	2020	*
Phylogeny	Reinekea marina sp. nov., isolated from seawater, and emended description of the genus Reinekea.	Kang H, Kim H, Joung Y, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000720	2015	*
Phylogeny	Reinekea aestuarii sp. nov., isolated from tidal flat sediment.	Choi A, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.018739-0	2010	*
Phylogeny	Reinekea blandensis sp. nov., a marine, genome-sequenced gammaproteobacterium.	Pinhassi J, Pujalte MJ, Macian MC, Lekunberri I, Gonzalez JM, Pedros-Alio C, Arahal DR	Int J Syst Evol Microbiol	10.1099/ijs.0.65091-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21754

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29825

#32185

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28427 (see below)

#59418 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52066

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89022

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID311000.1 )

#28427

IJSEM 2370 2007 ( DOI 10.1099/ijs.0.65091-0 , PubMed 17911313 )

* These data were automatically processed and therefore are not curated

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