Name: Nocardia vulneris W9851
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130474

Type strain:

Species: Nocardia vulneris

Strain Designation: W9851

Culture col. no.: DSM 45737, CCUG 62683, NBRC 108936, JCM 32220

Strain history: CCUG 62683 <-- B. A. Lasker; CDC, USA; W9851.

NCBI tax ID(s): 1141657 (species)

SI-ID 406059

DSM 45737, CCUG 62683

Special Collections

Other strains from Nocardia vulneris

Section

Nocardia vulneris W9851 is a microaerophile bacterium that was isolated from human leg wound.

microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Nocardia*
	Species	**Nocardia vulneris**
	Full Scientific Name (LPSN)	Nocardia vulneris Lasker et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.382

[Ref.: #62881]

Incubation period

3-5 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21692]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #21692]

Culture medium growth

[Ref.: #21692]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21692]

Culture medium composition

expand / minimize

[Ref.: #21692]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #21692]

Culture medium growth

[Ref.: #21692]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21692]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21692]	growth	28 °C
[Ref.: #21692]	growth	30 °C
[Ref.: #62881]	growth	37 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62881]

Oxygen tolerance

microaerophile

[Ref.: #67770]

Observation

quinones: MK-8(H₄, ω-cycl), MK-9, MK-8(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne
[Ref.: #68379]	catalase	+	1.11.1.6	* from API Coryne
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #21692]	4236	+	-	-	+	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21692]	Sample type/isolated from	human leg wound
[Ref.: #21692]	Geographic location (country and/or sea, region)	Illinois, Waukegan
[Ref.: #21692]	Country	USA
[Ref.: #21692]	Country ISO 3 Code	USA
[Ref.: #21692]	Continent	North America

[Ref.: #62881]	Sample type/isolated from	Human leg wound
[Ref.: #62881]	Sampling date	2009-04-23
[Ref.: #62881]	Geographic location (country and/or sea, region)	Illinois,Waukegan
[Ref.: #62881]	Country	USA
[Ref.: #62881]	Country ISO 3 Code	USA
[Ref.: #62881]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	54-male patient with a leg wound
[Ref.: #67770]	Geographic location (country and/or sea, region)	IL
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Limb	#Leg
#Host Body-Site	#Other	#Wound
#Infection	#Patient	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN705252 (>99% sequence identity) for Nocardia from Microbeatlas

Aquatic Samples	6
Soil Samples	59
Animal Samples	29
Plant Samples	10
Total Samples	104

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21692]	Nocardia vulneris strain W9851 16S ribosomal RNA gene, partial sequence	JN705252	1441	GenBank ENA	1141657 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nocardia vulneris NBRC 108936	GCA_001613425	contig	GenBank ENA	1141657 tax ID
[Ref.: #67770]	Nocardia vulneris W9851	GCA_000811985	contig	GenBank ENA	1141657 tax ID
[Ref.: #66792]	Nocardia vulneris W9851	1141657.3	wgs	PATRIC	1141657 tax ID	*
[Ref.: #66792]	Nocardia vulneris strain NBRC 108936	1141657.5	wgs	PATRIC	1141657 tax ID	*
[Ref.: #66792]	Nocardia vulneris W9851	2645727695	draft	JGI IMG/M	1141657 tax ID	*
[Ref.: #66792]	Nocardia vulneris NBRC 108936	2772190757	draft	JGI IMG/M	1141657 tax ID	*

[Ref.: #21692]	GC-content	68.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	68.1 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardia vulneris W9851 PATRIC: 1141657.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.382	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.918	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	72.23	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.791	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.4	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.5	no

Availability in culture collections External links

[Ref.: #21692]

Culture collection no.

DSM 45737, CCUG 62683, NBRC 108936, JCM 32220

[Ref.: #89003]

SI-ID 406059

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardia colli sp. nov., a new pathogen isolated from a patient with primary cutaneous nocardiosis.	Zhou T, Wang XY, Deng DQ, Xu LH, Li XL, Guo Y, Li WH, Xie H, Zhang PL, Zhou XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003856	2020	*
Phylogeny	Nocardia vulneris sp. nov., isolated from wounds of human patients in North America.	Lasker BA, Bell M, Klenk HP, Sproer C, Schumann C, Schumann P, Brown JM	Antonie Van Leeuwenhoek	10.1007/s10482-014-0226-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21692

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45737

#62881 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62683

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89003

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406059.1 )

* These data were automatically processed and therefore are not curated

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