Name: Actinoplanes siamensis A-T 6646
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130440

Type strain:

Species: Actinoplanes siamensis

Strain Designation: A-T 6646

Culture col. no.: DSM 46706, BCC 46194, NBRC 109076

Strain history: <- C Suriyachadkun, BCC; BCC 46194 <- C Suriyachadkun; A-T 6646

NCBI tax ID(s): 1223317 (species)

SI-ID 399657

DSM 46706

Special Collections

Section

Actinoplanes siamensis A-T 6646 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from Bamboo forest soil.

Gram-positive
motile
ovoid-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Actinoplanes*
	Species	**Actinoplanes siamensis**
	Full Scientific Name (LPSN)	Actinoplanes siamensis Suriyachadkun et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30942]	Gram stain	positive

[Ref.: #30942]	Cell shape	ovoid-shaped

[Ref.: #30942]	Motility	yes

[Ref.: #30942]

Pigment production

yes

Multimedia content

[Ref.: #21460]

Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21460]

Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #21460]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21460]	growth	28 °C
[Ref.: #30942]	growth	25-40 °C
[Ref.: #30942]	optimum	27.5 °C

	pH	Kind of pH		pH
[Ref.: #30942]			optimum	8.5
[Ref.: #30942]			growth	06-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30942]

Oxygen tolerance

aerobe

[Ref.: #30942]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30942]		NaCl		growth	0-1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30942]	cellobiose ChEBI	+	carbon source
[Ref.: #30942]	fructose ChEBI	+	carbon source
[Ref.: #30942]	galactose ChEBI	+	carbon source
[Ref.: #30942]	glucose ChEBI	+	carbon source
[Ref.: #30942]	mannose ChEBI	+	carbon source
[Ref.: #30942]	xylose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30942]	acid phosphatase	+	3.1.3.2
[Ref.: #30942]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30942]	catalase	+	1.11.1.6
[Ref.: #30942]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21460]	Sample type/isolated from	Bamboo forest soil
[Ref.: #21460]	Geographic location (country and/or sea, region)	Khorn Kaen Province
[Ref.: #21460]	Country	Thailand
[Ref.: #21460]	Country ISO 3 Code	THA
[Ref.: #21460]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX283293 (>99% sequence identity) for Actinoplanes siamensis subclade from Microbeatlas

Aquatic Samples
Soil Samples	5
Animal Samples
Plant Samples
Total Samples	5

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21460]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21460]	Actinoplanes siamensis strain A-T 6646 16S ribosomal RNA gene, partial sequence	JX283293	1451	GenBank ENA	1223317 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinoplanes siamensis NBRC 109076	GCA_016862395	contig	GenBank ENA	1223317 tax ID	*
[Ref.: #66792]	Actinoplanes siamensis strain NBRC 109076	1223317.3	wgs	PATRIC	1223317 tax ID	*

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GC-content

72 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinoplanes siamensis strain NBRC 109076 PATRIC: 1223317.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinoplanes siamensis strain NBRC 109076 PATRIC: 1223317.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.797	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.806	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	88.523	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.872	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.75	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	65.833	no

Availability in culture collections External links

[Ref.: #21460]

Culture collection no.

DSM 46706, BCC 46194, NBRC 109076

[Ref.: #88970]

SI-ID 399657

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoplanes siamensis sp. nov., isolated from soil.	Suriyachadkun C, Ngaemthao W, Chunhametha S, Thawai C, Sanglier JJ	Int J Syst Evol Microbiol	10.1099/ijs.0.048017-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21460

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46706

#30942

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27272 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88970

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399657.1 )

#27272

IJSEM 3037 2013 ( DOI 10.1099/ijs.0.048017-0 , PubMed 23396720 )

* These data were automatically processed and therefore are not curated

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Actinoplanes siamensis strain NBRC 109076

Actinoplanes siamensis strain NBRC 109076

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