Actinoplanes siamensis (DSM 46706, BCC 46194, NBRC 109076)

Name: Actinoplanes siamensis (DSM 46706, BCC 46194, NBRC 109076)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130440

Type strain

Strain Designation A-T 6646

Culture col. no. DSM 46706 BCC 46194 NBRC 109076 A-T 6646

NCBI tax ID(s) 1223317

Special Collections DSMZ Literature strains

History <- C Suriyachadkun, BCC; BCC 46194 <- C Suriyachadkun; A-T 6646

Links

Actinoplanes siamensis A-T 6646 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from Bamboo forest soil.

spore-forming Gram-positive motile ovoid-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399657

NBRC 109076,DSM 46706

@ref 20215

Last LPSN update 2026-02-09 11:31:13

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Actinoplanes

Species Actinoplanes siamensis

Full scientific name Actinoplanes siamensis Suriyachadkun et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
30942	positive	ovoid-shaped
125439	positive			99

Pigmentation

30942

Productionyes

Multimedia

@ref:	21460
multimedia content:	DSM_46706.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46706.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21460	CZAPEK PEPTONE AGAR (DSMZ Medium 83)		Medium recipe at MediaDive	Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water
21460	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21460	positive	growth	28
30942	positive	growth	25-40
30942	positive	optimum	27.5

Culture pH

@ref	Ability	Type	PH	PH range
30942	positive	optimum	8.5
30942	positive	growth	06-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30942	aerobe
125439	obligate aerobe	98.6

Spore formation

30942

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30942	NaCl	positive	growth	0-1 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30942	17057 ChEBI	cellobiose	+	carbon source
30942	28757 ChEBI	fructose	+	carbon source
30942	28260 ChEBI	galactose	+	carbon source
30942	17234 ChEBI	glucose	+	carbon source
30942	37684 ChEBI	mannose	+	carbon source
30942	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30942	acid phosphatase	+	3.1.3.2
30942	alkaline phosphatase	+	3.1.3.1
30942	catalase	+	1.11.1.6
30942	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21460	Bamboo forest soil	Khorn Kaen Province	Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence JX283293 (>99% sequence identity) for Actinoplanes siamensis subclade from Microbeatlas

Aquatic Samples
Soil Samples	5
Animal Samples
Plant Samples
Total Samples	5

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21460	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1686239v1 assembly for Actinoplanes siamensis NBRC 109076	contig	GCA_016862395	1223317.3	3002521480	1223317	41.56

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21460	Actinoplanes siamensis strain A-T 6646 16S ribosomal RNA gene, partial sequence	JX283293	1451		1223317

GC content

21460

GC-content (mol%)72

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinoplanes siamensis NBRC 109076
NCBI: GCA_016862395

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	73.10	no
125439	motility	BacteriaNetⓘ	no	79.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinoplanes siamensis strain NBRC 109076
PATRIC: 1223317.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.80	yes
125438	anaerobic	anaerobicⓘ	no	92.81	yes
125438	spore-forming	spore-formingⓘ	yes	88.52	no
125438	aerobic	aerobicⓘ	yes	89.87	yes
125438	thermophilic	thermophileⓘ	no	93.75	no
125438	flagellated	motile2+ⓘ	no	65.83	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoplanes siamensis sp. nov., isolated from soil.	Suriyachadkun C, Ngaemthao W, Chunhametha S, Thawai C, Sanglier JJ	Int J Syst Evol Microbiol	10.1099/ijs.0.048017-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21460	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46706
#27272	IJSEM 3037 2013 ( DOI 10.1099/ijs.0.048017-0 , PubMed 23396720 )
#30942	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27272
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Actinoplanes siamensis (DSM 46706, BCC 46194, NBRC 109076)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016862395

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media