Name: Sporohalobacter salinus CEJFT1B
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130349

Type strain:

Species: Sporohalobacter salinus

Strain Designation: CEJFT1B

Culture col. no.: DSM 26781, JCM 19279

Strain history: J.-L. Cayol CEJFT1B.

NCBI tax ID(s): 1494606 (species)

SI-ID 402806

DSM 26781

Special Collections

DSMZ
JCM

Section

Sporohalobacter salinus CEJFT1B is an anaerobe, spore-forming, Gram-negative bacterium that was isolated from sediment under the salt crust of a hypersaline lake.

Gram-negative
spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Halanaerobiales*
	Family	*Halobacteroidaceae*
	Genus	*Sporohalobacter*
	Species	**Sporohalobacter salinus**
	Full Scientific Name (LPSN)	Sporohalobacter salinus Ben Abdallah et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21799]

Culture medium

SPOROHALOBACTER SALINUS MEDIUM (DSMZ Medium 1577)

[Ref.: #21799]

Culture medium growth

[Ref.: #21799]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21799]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21799]			growth	40 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21799]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21799]	Sample type/isolated from	sediment under the salt crust of a hypersaline lake
[Ref.: #21799]	Geographic location (country and/or sea, region)	shore of Chott el Jerid lake
[Ref.: #21799]	Country	Tunisia
[Ref.: #21799]	Country ISO 3 Code	TUN
[Ref.: #21799]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Sediment under the salt crust of EI-Jerid hypersaline lake in southern Tunisia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21799]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21799]	Sporohalobacter salinus strain CEJFT1B 16S ribosomal RNA gene, partial sequence	KJ477328	1527	GenBank ENA	1494606 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sporohalobacter salinus DSM 26781	GCA_016908635	contig	GenBank ENA	1494606 tax ID	*
[Ref.: #66792]	Sporohalobacter salinus strain DSM 26781	1494606.3	wgs	PATRIC	1494606 tax ID	*
[Ref.: #66792]	Sporohalobacter salinus DSM 26781	2901172808	draft	JGI IMG/M	1494606 tax ID	*

[Ref.: #21799]	GC-content	32.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	32.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sporohalobacter salinus strain DSM 26781 PATRIC: 1494606.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sporohalobacter salinus strain DSM 26781 PATRIC: 1494606.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	77.178	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	85.431	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	55.344	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	90.501	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	86.506	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	67.055	no

Availability in culture collections External links

[Ref.: #21799]

Culture collection no.

DSM 26781, JCM 19279

[Ref.: #88881]

SI-ID 402806

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of Sporohalobacter salinus sp. nov., an anaerobic, halophilic, fermentative bacterium isolated from a hypersaline lake.	Ben Abdallah M, Karray F, Mhiri N, Cayol JL, Tholozan JL, Alazard D, Sayadi S	Int J Syst Evol Microbiol	10.1099/ijs.0.066845-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21799

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26781

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88881

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402806.1 )

* These data were automatically processed and therefore are not curated

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Sporohalobacter salinus strain DSM 26781

Sporohalobacter salinus strain DSM 26781

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