Strain identifier
BacDive ID: 130349
Type strain:
Species: Sporohalobacter salinus
Strain Designation: CEJFT1B
Strain history: J.-L. Cayol CEJFT1B.
NCBI tax ID(s): 1494606 (species)
General
@ref: 21799
BacDive-ID: 130349
DSM-Number: 26781
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, thermophilic, motile
description: Sporohalobacter salinus CEJFT1B is an anaerobe, spore-forming, thermophilic bacterium that was isolated from sediment under the salt crust of a hypersaline lake.
NCBI tax id
- NCBI tax id: 1494606
- Matching level: species
strain history
@ref | history |
---|---|
21799 | <- J.-L. Cayol, IRD, Marseille; CEJFT1B <- M. Ben-Abdallah {2011} |
67770 | J.-L. Cayol CEJFT1B. |
doi: 10.13145/bacdive130349.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Halanaerobiales
- family: Halobacteroidaceae
- genus: Sporohalobacter
- species: Sporohalobacter salinus
- full scientific name: Sporohalobacter salinus Ben Abdallah et al. 2015
@ref: 21799
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Halanaerobiales
family: Halobacteroidaceae
genus: Sporohalobacter
species: Sporohalobacter salinus
full scientific name: Sporohalobacter salinus Ben Abdallah et al. 2015
strain designation: CEJFT1B
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 95.396 | |
69480 | 99.842 | negative |
Culture and growth conditions
culture medium
- @ref: 21799
- name: SPOROHALOBACTER SALINUS MEDIUM (DSMZ Medium 1577)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1577
- composition: Name: SPOROHALOBACTER SALINUS MEDIUM (DSMZ Medium 1577) Composition: MgSO4 5.0 g/l Tryptone 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.0 g/l NH4Cl 1.0 g/l KCl 0.8 g/l L-Cysteine HCl x H2O 0.5 g/l Yeast extract 0.5 g/l Na-acetate 0.5 g/l K2HPO4 0.5 g/l Na2S x 9 H2O 0.5 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l CoSO4 x 7 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l Sodium resazurin 0.0005 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l CuSO4 x 5 H2O 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21799 | positive | growth | 40 | thermophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
21799 | anaerobe | |
69480 | anaerobe | 100 |
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 100
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
21799 | sediment under the salt crust of a hypersaline lake | shore of Chott el Jerid lake | Tunisia | TUN | Africa |
67770 | Sediment under the salt crust of EI-Jerid hypersaline lake in southern Tunisia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Lake (large) |
#Environmental | #Aquatic | #Sediment |
#Condition | #Saline |
Safety information
risk assessment
- @ref: 21799
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21799
- description: Sporohalobacter salinus strain CEJFT1B 16S ribosomal RNA gene, partial sequence
- accession: KJ477328
- length: 1527
- database: ena
- NCBI tax ID: 1494606
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Sporohalobacter salinus DSM 26781 | GCA_016908635 | contig | ncbi | 1494606 |
66792 | Sporohalobacter salinus strain DSM 26781 | 1494606.3 | wgs | patric | 1494606 |
66792 | Sporohalobacter salinus DSM 26781 | 2901172808 | draft | img | 1494606 |
GC content
@ref | GC-content | method |
---|---|---|
21799 | 32.3 | high performance liquid chromatography (HPLC) |
67770 | 32.8 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 89.457 | no |
gram-positive | no | 94.103 | no |
anaerobic | yes | 98.817 | yes |
aerobic | no | 96.37 | yes |
halophile | no | 55.719 | no |
spore-forming | no | 54.572 | no |
thermophile | yes | 51.98 | no |
glucose-util | yes | 86.837 | no |
flagellated | no | 58.892 | no |
glucose-ferment | no | 62.42 | no |
External links
@ref: 21799
culture collection no.: DSM 26781, JCM 19279
straininfo link
- @ref: 88881
- straininfo: 402806
literature
- topic: Phylogeny
- Pubmed-ID: 25389147
- title: Characterization of Sporohalobacter salinus sp. nov., an anaerobic, halophilic, fermentative bacterium isolated from a hypersaline lake.
- authors: Ben Abdallah M, Karray F, Mhiri N, Cayol JL, Tholozan JL, Alazard D, Sayadi S
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.066845-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Geologic Sediments/microbiology, Gram-Negative Anaerobic Bacteria/*classification/genetics/isolation & purification, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Tunisia
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21799 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26781 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26781) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
88881 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402806.1 |