Wenyingzhuangia marina (DSM 100572, CGMCC 1.12162, JCM 18494)

Name: Wenyingzhuangia marina (DSM 100572, CGMCC 1.12162, JCM 18494)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130334

Type strain

Strain Designation D1

Culture col. no. DSM 100572 CGMCC 1.12162 JCM 18494 D1

NCBI tax ID(s) 1195760

Special Collections DSMZ JCM

History <- JCM <- Y. Liu and others, State Key Lab. Microbial Resources, Inst. Microbiol., Chinese Academy of Sciences, Beijing Z.-P. Liu D1.

Links

Wenyingzhuangia marina D1 is a bacterium that was isolated from tank of a recirculating mariculture system rearing grouper (Epinephelus malabaricas.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405664

JCM 18494,DSM 100572

@ref 20215

Last LPSN update 2026-02-09 11:31:11

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Wenyingzhuangia

Species Wenyingzhuangia marina

Full scientific name Wenyingzhuangia marina Liu et al. 2014

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	92
125438	97.477	negative
125439	99.9	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22101	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830; with strain-specific modifications) Composition: NaCl 30.0 g/l Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l Na-pyruvate 0.3 g/l K2HPO4 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22101	positive	growth	25
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.2

Spore formation

@ref	Spore formation	Confidence
125438		91.898
125439		98.6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
22101	+	-	-	-	-	-	-	-	-	+	-	+	-	-	-	+	-	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#Container (Reservoir)
#Environmental	#Aquatic	#Marine
#Host	#Fishes	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
22101	tank of a recirculating mariculture system rearing grouper (Epinephelus malabaricas	Epinephelus malabaricas	Tianjin	China	CHN	Asia
67770	Water sample from a grouper (Epinephelus malabaricas) culture tank of a recirculating marine culture system	Epinephelus malabaricas	Tianjin	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JQ948039 (>99% sequence identity) for Wenyingzhuangia marina subclade from Microbeatlas

Aquatic Samples	306
Soil Samples	26
Animal Samples	6
Plant Samples	1
Total Samples	339

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22101	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2695421042 annotated assembly for Wenyingzhuangia marina DSM 100572	scaffold	GCA_900130035	1195760.3	2695421042	1195760	74.8
66792	ASM1463651v1 assembly for Wenyingzhuangia marina CGMCC 1.12162	scaffold	GCA_014636515	1195760.6	8063542326	1195760	73.67

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22101	Wenyingzhuangia marina strain D1 16S ribosomal RNA gene, partial sequence	JQ948039	1390		1195760

GC content

@ref	GC-content (mol%)	Method
67770	35.9	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Wenyingzhuangia marina CGMCC 1.12162
NCBI: GCA_014636515

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	motility	BacteriaNetⓘ	no	55.70	no
125439	spore_formation	BacteriaNetⓘ	no	98.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Wenyingzhuangia marina CGMCC 1.12162
NCBI: GCA_014636515.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.48	no
125438	anaerobic	anaerobicⓘ	no	92.00	no
125438	aerobic	aerobicⓘ	yes	86.05	no
125438	spore-forming	spore-formingⓘ	no	91.90	no
125438	thermophilic	thermophileⓘ	no	95.43	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Wenyingzhuangia fucanilytica sp. nov., a sulfated fucan utilizing bacterium isolated from shallow coastal seawater.	Chen F, Chang Y, Dong S, Xue C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001184	2016
Phylogeny	Wenyingzhuangia marina gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from a recirculating mariculture system.	Liu Y, Liu LZ, Liu HC, Zhou YG, Qi FJ, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.055012-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22101	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100572
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Wenyingzhuangia marina (DSM 100572, CGMCC 1.12162, JCM 18494)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900130035

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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