Name: Wenyingzhuangia marina D1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130334

Type strain:

Species: Wenyingzhuangia marina

Strain Designation: D1

Culture col. no.: DSM 100572, CGMCC 1.12162, JCM 18494

Strain history: Z.-P. Liu D1.

NCBI tax ID(s): 1195760 (species)

SI-ID 405664

DSM 100572

Section

Wenyingzhuangia marina D1 is a mesophilic bacterium that was isolated from tank of a recirculating mariculture system rearing grouper (Epinephelus malabaricas.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Wenyingzhuangia*
	Species	**Wenyingzhuangia marina**
	Full Scientific Name (LPSN)	Wenyingzhuangia marina Liu et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #69480]	Motility	no Confidence in %90.314

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22101]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22101]

Culture medium growth

[Ref.: #22101]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22101]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22101]			growth	25 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #22101]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	+	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #22101]	16700	+	-	-	-	-	-	-	-	-	+	-	+	-	-	-	+	-	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22101]	Sample type/isolated from	tank of a recirculating mariculture system rearing grouper (Epinephelus malabaricas
[Ref.: #22101]	Host species	Epinephelus malabaricas
[Ref.: #22101]	Geographic location (country and/or sea, region)	Tianjin
[Ref.: #22101]	Country	China
[Ref.: #22101]	Country ISO 3 Code	CHN
[Ref.: #22101]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Water sample from a grouper (Epinephelus malabaricas) culture tank of a recirculating marine culture system
[Ref.: #67770]	Host species	Epinephelus malabaricas
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tianjin
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Container (Reservoir)
#Environmental	#Aquatic	#Marine
#Host	#Fishes	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ948039 (>99% sequence identity) for Wenyingzhuangia marina subclade from Microbeatlas

Aquatic Samples	306
Soil Samples	26
Animal Samples	6
Plant Samples	1
Total Samples	339

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22101]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22101]	Wenyingzhuangia marina strain D1 16S ribosomal RNA gene, partial sequence	JQ948039	1390	ENA	1195760 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Wenyingzhuangia marina DSM 100572	GCA_900130035	scaffold	GenBank	1195760 tax ID
[Ref.: #66792]	Wenyingzhuangia marina CGMCC 1.12162	GCA_014636515	scaffold	GenBank	1195760 tax ID	*
[Ref.: #66792]	Wenyingzhuangia marina strain CGMCC 1.12162	1195760.6	wgs	PATRIC	1195760 tax ID	*
[Ref.: #66792]	Wenyingzhuangia marina strain DSM 100572	1195760.3	wgs	PATRIC	1195760 tax ID	*
[Ref.: #66792]	Wenyingzhuangia marina DSM 100572	2695421042	draft	JGI IMG/M	1195760 tax ID	*

[Ref.: #67770]

GC-content

35.9 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Wenyingzhuangia marina DSM 100572 NCBI: GCA_900130035.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Wenyingzhuangia marina CGMCC 1.12162 NCBI: GCA_014636515.1
[Ref.: #69480]	flagellated	no	94.219	no
[Ref.: #69480]	gram-positive	no	98.318	no
[Ref.: #69480]	anaerobic	no	99.588	no
[Ref.: #69480]	aerobic	yes	84.828	no
[Ref.: #69480]	halophile	no	83.076	no
[Ref.: #69480]	spore-forming	no	95.877	no
[Ref.: #69480]	thermophile	no	99.017	yes
[Ref.: #69480]	glucose-util	yes	88.777	no
[Ref.: #69480]	motile	no	90.669	no
[Ref.: #69480]	glucose-ferment	no	81.026	yes

Availability in culture collections External links

[Ref.: #22101]

Culture collection no.

DSM 100572, CGMCC 1.12162, JCM 18494

[Ref.: #88866]

SI-ID 405664

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Wenyingzhuangia fucanilytica sp. nov., a sulfated fucan utilizing bacterium isolated from shallow coastal seawater.	Chen F, Chang Y, Dong S, Xue C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001184	2016	*
Phylogeny	Wenyingzhuangia marina gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from a recirculating mariculture system.	Liu Y, Liu LZ, Liu HC, Zhou YG, Qi FJ, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.055012-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22101

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100572

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88866

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405664.1 )

* These data were automatically processed and therefore are not curated

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Wenyingzhuangia marina DSM 100572

Wenyingzhuangia marina CGMCC 1.12162

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