Flagellimonas pacifica (DSM 25885, JCM 18379, LMG 26997)

Name: Flagellimonas pacifica (DSM 25885, JCM 18379, LMG 26997)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130333

Type strain

Strain Designation sw169

Culture col. no. DSM 25885 JCM 18379 LMG 26997 sw169 KCTC 52762

NCBI tax ID(s) 1247520

Special Collections DSMZ JCM KCTC

History <- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; sw169 X.-H. Zhang and X. Song SW169.

Links

Flagellimonas pacifica sw169 is a bacterium that was isolated from surface seawater.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401814

LMG 26997,KCTC 52762,JCM 18379,DSM 25885

@ref 20215

Last LPSN update 2026-02-09 11:31:11

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flagellimonas

Species Flagellimonas pacifica

Full scientific name Flagellimonas pacifica (Gao et al. 2015) Choi et al. 2018

Synonyms (3)

Muricauda parva
Allomuricauda parva
Spongiibacterium pacificum

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	93.5
125438	99	negative
125439	98.8	negative

Colony morphology

22087

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22087	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22087	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		91.476
125439		94.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

Isolation

@ref	Sample type	Geographic location	Latitude	Longitude
22087	surface seawater	South Pacific Gyre (27° 55' S 123° 10' W)	-27.9167	-123.167 -27.9167/-123.167
67770	Surface seawater from the South Pacific Gyre (27° 55' S 123° 10' W)		-27.9167	-123.167 -27.9167/-123.167

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22087	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2728369489 annotated assembly for Flagellimonas pacifica DSM 25885	scaffold	GCA_900215465	1247520.3	2728369489	1247520	74.77

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22087	Spongiibacterium pacificum strain SW169 16S ribosomal RNA gene, partial sequence	JX501249	1485		1247520

GC content

@ref	GC-content (mol%)	Method
22087	43.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Allomuricauda parva DSM 25885
NCBI: GCA_900215465

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.80	no
125439	motility	BacteriaNetⓘ	no	72.50	no
125439	spore_formation	BacteriaNetⓘ	no	94.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Spongiibacterium pacificum strain DSM 25885
PATRIC: 1247520.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	95.36	no
125438	spore-forming	spore-formingⓘ	no	91.48	no
125438	aerobic	aerobicⓘ	yes	84.58	no
125438	thermophilic	thermophileⓘ	no	98.84	yes
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22087	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25885
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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