Name: Desulfobulbus alkaliphilus APS1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130283

Type strain:

Species: Desulfobulbus alkaliphilus

Strain Designation: APS1

Culture col. no.: DSM 24258, UNIQEM U900

Strain history: <- D. Y. Sorokin, Dept. Biotechnol., Delft Univ. Technol., Netherlands; APS1 <- D. Y. Sorokin {2010}

NCBI tax ID(s): 869814 (species)

SI-ID 402108

DSM 24258

Special Collections

Section

Desulfobulbus alkaliphilus APS1 is an anaerobe, Gram-negative, motile bacterium that was isolated from sediments from a hypersaline soda lake.

Gram-negative
motile
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfobacterales*
	Family	*Desulfobulbaceae*
	Genus	*Desulfobulbus*
	Species	**Desulfobulbus alkaliphilus**
	Full Scientific Name (LPSN)	Desulfobulbus alkaliphilus Sorokin et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30132]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.589

[Ref.: #30132]	Cell length	2.25 µm

[Ref.: #30132]	Cell width	1.25 µm

[Ref.: #30132]	Cell shape	rod-shaped

[Ref.: #30132]	Motility	yes

[Ref.: #21886]

Incubation period

8-14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21886]

Culture medium

DESULFONATRONUM THIOAUTOTROPHICUM MEDIUM (DSMZ Medium 1166)

[Ref.: #21886]

Culture medium growth

[Ref.: #21886]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21886]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21886]			growth	30 °C
[Ref.: #30132]			optimum	33 °C

	pH	Kind of pH		pH
[Ref.: #30132]			optimum	9.4
[Ref.: #30132]			growth	8.2-10.2

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21886]	Oxygen tolerance	anaerobe
[Ref.: #30132]	Oxygen tolerance	anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %96

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30132]		NaCl		growth	0.58-8.7	%
[Ref.: #30132]		NaCl		optimum	1.16	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30132]		propionate ChEBI	+	carbon source
[Ref.: #30132]		pyruvate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21886]	Sample type/isolated from	sediments from a hypersaline soda lake
[Ref.: #21886]	Geographic location (country and/or sea, region)	Altai, south-western Siberia, Kulunda Steppe
[Ref.: #21886]	Country	Russia
[Ref.: #21886]	Country ISO 3 Code	RUS
[Ref.: #21886]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-
#Condition	#Alkaline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM750216 (>99% sequence identity) for Desulfobulbus alkaliphilus subclade from Microbeatlas

Aquatic Samples	221
Soil Samples	26
Animal Samples	14
Plant Samples	88
Total Samples	349

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21886]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21886]	Desulfobulbus alkaliphilus strain APS1 16S ribosomal RNA gene, partial sequence	HM750216	1500	GenBank ENA	869814 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfobulbus alkaliphilus DSM 24258	GCA_016918545	contig	GenBank ENA	869814 tax ID	*
[Ref.: #66792]	Desulfobulbus alkaliphilus strain DSM 24258	869814.3	wgs	PATRIC	869814 tax ID	*

[Ref.: #21886]	GC-content	52.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30132]	GC-content	52.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfobulbus alkaliphilus strain DSM 24258 PATRIC: 869814.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	96	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfobulbus alkaliphilus strain DSM 24258 PATRIC: 869814.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.589	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	79.856	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	76.151	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	83.992	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	83.301	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	77.034	no

Availability in culture collections External links

[Ref.: #21886]

Culture collection no.

DSM 24258, UNIQEM U900

[Ref.: #88818]

SI-ID 402108

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfonatronobacter acidivorans gen. nov., sp. nov. and Desulfobulbus alkaliphilus sp. nov., haloalkaliphilic heterotrophic sulfate-reducing bacteria from soda lakes.	Sorokin DY, Tourova TP, Panteleeva AN, Muyzer G	Int J Syst Evol Microbiol	10.1099/ijs.0.029777-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21886

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24258

#30132

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26483 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88818

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402108.1 )

#26483

IJSEM 2107 2012 ( DOI 10.1099/ijs.0.029777-0 , PubMed 22039002 )

* These data were automatically processed and therefore are not curated

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Desulfobulbus alkaliphilus strain DSM 24258

Desulfobulbus alkaliphilus strain DSM 24258

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