Name: Paraburkholderia fungorum PNG-April
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130232

Type strain:

Species: Paraburkholderia fungorum

Strain Designation: PNG-April

Culture col. no.: DSM 28142, LMG 28183

Strain history: <- A. Rusch, Southern Illinois University Carbondale <- S. Islam; PNG-April

NCBI tax ID(s): 1441714 (species)

SI-ID 392406

LMG 28183, DSM 28142

Other strains from Paraburkholderia fungorum

P. fungorum DSM 17061, ATCC BAA-463, CCM 7151, ... (type strain)
P. fungorum 9-5, DSM 1749
P. fungorum STI25000(IMET), 25000, H108,
P. fungorum STH00349(ZIMET), HKI 0349, FMJ ...
P. fungorum CCUG 22618, LMG 18809
P. fungorum CCUG 61769

Section

Paraburkholderia fungorum PNG-April is a mesophilic, motile bacterium that was isolated from arsenic-rich shallow-sea hydrothermal area.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Paraburkholderia*
	Species	**Paraburkholderia fungorum**
	Full Scientific Name (LPSN)	Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015

	Synonym	Burkholderia fungorum
	Synonym	Paraburkholderia insulsa
	Synonym	Burkholderia insulsa

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.995

[Ref.: #69480]	Motility	yes Confidence in %97.227

[Ref.: #21543]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21543]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #21543]

Culture medium growth

[Ref.: #21543]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21543]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21543]			growth	30 °C

[Ref.: #21543]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.987

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #21543]	catalase	+	1.11.1.6
[Ref.: #21543]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #21543]	23984	+	-	-	-	-	+/-	-	+	+	+	+	+/-	+	-	+	+	+	+	+	+	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21543]	Sample type/isolated from	arsenic-rich shallow-sea hydrothermal area
[Ref.: #21543]	Geographic location (country and/or sea, region)	Ambitle Island, Tutum Bay (04°05' S 153° 33' E)
[Ref.: #21543]	Country	Papua New Guinea
[Ref.: #21543]	Country ISO 3 Code	PNG
[Ref.: #21543]	Continent	Australia and Oceania
[Ref.: #21543]	Geographic location	-4.0833°/153.5500°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Climate	#Hot	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF733462 (>99% sequence identity) for Burkholderiaceae from Microbeatlas

Aquatic Samples	4252
Soil Samples	15481
Animal Samples	6757
Plant Samples	3804
Total Samples	30294

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21543]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21543]	Burkholderia insulsa strain PNG-April 16S ribosomal RNA gene, partial sequence	KF733462	1414	ENA	1441714 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paraburkholderia fungorum LMG 28183	GCA_003002115	contig	GenBank	134537 tax ID	*
[Ref.: #66792]	Paraburkholderia insulsa strain LMG 28183	1441714.3	wgs	PATRIC	1441714 tax ID	*
[Ref.: #66792]	Pseudomonas sp. DSM 28142	1615675.3	wgs	PATRIC	1441714 tax ID	*
[Ref.: #66792]	Paraburkholderia insulsa LMG 28183	2708743155	draft	JGI IMG/M	1441714 tax ID	*

[Ref.: #21543]

GC-content

62.0 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudomonas sp. DSM 28142 PATRIC: 1615675.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paraburkholderia insulsa strain LMG 28183 PATRIC: 1441714.3
[Ref.: #69480]	motile	yes	87.321	no
[Ref.: #69480]	gram-positive	no	97.704	no
[Ref.: #69480]	anaerobic	no	98.92	no
[Ref.: #69480]	halophile	no	94.869	no
[Ref.: #69480]	spore-forming	no	91.086	no
[Ref.: #69480]	thermophile	no	99.644	no
[Ref.: #69480]	glucose-util	yes	91.715	no
[Ref.: #69480]	aerobic	yes	89.222	no
[Ref.: #69480]	flagellated	no	85.966	no
[Ref.: #69480]	glucose-ferment	no	89.283	yes

Availability in culture collections External links

[Ref.: #21543]

Culture collection no.

DSM 28142, LMG 28183

[Ref.: #88774]

SI-ID 392406

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paraburkholderia aromaticivorans sp. nov., an aromatic hydrocarbon-degrading bacterium, isolated from gasoline-contaminated soil.	Lee Y, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002661	2018	*
Phylogeny	Burkholderia insulsa sp. nov., a facultatively chemolithotrophic bacterium isolated from an arsenic-rich shallow marine hydrothermal system.	Rusch A, Islam S, Savalia P, Amend JP	Int J Syst Evol Microbiol	10.1099/ijs.0.064477-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21543

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28142

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88774

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID392406.1 )

* These data were automatically processed and therefore are not curated

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Pseudomonas sp. DSM 28142

Paraburkholderia insulsa strain LMG 28183

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