Bacillus siamensis (DSM 25261, BCC 22614, KACC 16244)

Name: Bacillus siamensis (DSM 25261, BCC 22614, KACC 16244)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1302

Type strain

Strain Designation PD-A10

Culture col. no. DSM 25261 BCC 22614 KACC 16244 KCTC 13613 PD-A10 1 more

NCBI tax ID(s) 1177185 659243

Special Collections DSMZ KCTC Literature strains CIP

Links

Bacillus siamensis PD-A10 is a facultative anaerobe, spore-forming, mesophilic prokaryote that was isolated from salted crab.

spore-forming Gram-positive motile rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 371008

DSM 25261,NCCB 100507,BCC 22614,KCTC 13613,LMG 27594,CIP 110217

@ref 20215

Last LPSN update 2025-12-16 09:47:04

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Species Bacillus siamensis

Full scientific name Bacillus siamensis Sumpavapol et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement
29694	positive	1.5-3.5 µm	0.3-0.6 µm	rod-shaped
67771				rod-shaped	peritrichous
67771	positive
122594	positive			rod-shaped

Pigmentation

29694

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17960	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l MnSO4 0.01 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
40433	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122594	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17960	positive	growth	30	mesophilic
29694	positive	growth	04-55
29694	positive	optimum	37	mesophilic
40433	positive	growth	37	mesophilic
67771	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29694	positive	optimum	06-07
29694	positive	growth	4.5-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29694	facultative anaerobe
67771	aerobe
122594	facultative anaerobe

Spore formation

@ref	Type of spore	Confidence
29694
67771	endospore
122594
125438		96.125

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29694	NaCl	positive	growth	0-14 %

Observation

@ref	Observation
29694	aggregates in chains
67771	quinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
29694	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
29694	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
29694	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
29694	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
29694	17234 ChEBI	glucose	+	carbon source
29694	17754 ChEBI	glycerol	+	carbon source
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
29694	28087 ChEBI	glycogen	+	carbon source
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
29694	17716 ChEBI	lactose	+	carbon source
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
29694	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
29694	29864 ChEBI	mannitol	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
122594	17632 ChEBI	nitrate	+	reduction
122594	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
29694	16634 ChEBI	raffinose	+	carbon source
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
29694	33942 ChEBI	ribose	+	carbon source
29694	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
29694	30911 ChEBI	sorbitol	+	carbon source
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
29694	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
29694	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122594	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29694	catalase	+	1.11.1.6
122594	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122594	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
122594	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122594	-	+	+	+	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122594	not determinedn.d.	+	-	-	+	+	+	-	-	-	+/-	+	+	-	-	-	-	+/-	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+/-	+/-	-	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Crustacea
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17960	salted crab		Thailand	THA	Asia
67771	From fermented crab (`Poo-Dong`)	Nakornpathom Province	Thailand	THA	Asia
122594	Salted crab, poo-khem		Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence GQ281299 (>99% sequence identity) for Bacillus from Microbeatlas

Aquatic Samples	2854
Soil Samples	3768
Animal Samples	9674
Plant Samples	1905
Total Samples	18201

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17960	1	Risk group (German classification) According to TRBA 466
122594	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	KCTC_13613_01 assembly for Bacillus siamensis KCTC 13613	contig	GCA_000262045	1177185.3	2548877022	1177185	69.53

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
17960	Bacillus siamensis strain PD-A10 16S ribosomal RNA gene, partial sequence	GQ281299	1525	1177185
124043	Bacillus siamensis KCTC 13613 16S ribosomal RNA gene, partial sequence.	KT781674	1419	1177185
124043	Bacillus siamensis KCTC 13613 16S ribosomal RNA gene, partial sequence.	KT781675	1448	672
124043	Bacillus siamensis KCTC 13613 16S ribosomal RNA gene, partial sequence.	KT781677	1404	1803213
124043	Bacillus siamensis KCTC 13613 16S ribosomal RNA gene, partial sequence.	KT781678	1402	1803214
124043	Bacillus siamensis KCTC 13613 16S ribosomal RNA gene, partial sequence.	KT781679	1398	1803215
124043	Bacillus siamensis KCTC 13613 16S ribosomal RNA gene, partial sequence.	OM995809	1394	1177185
124043	Bacillus siamensis KCTC 13613 16S ribosomal RNA gene, partial sequence.	OQ618961	1374	1177185
124043	Bacillus siamensis KCTC 13613 16S ribosomal RNA gene, partial sequence.	OQ625908	1374	1177185
124043	Bacillus siamensis KCTC 13613 16S ribosomal RNA gene, partial sequence.	MZ573378	1414	1177185
124043	Bacillus siamensis KCTC 13613 16S ribosomal RNA gene, partial sequence.	MN176482	1473	1177185
124043	Bacillus siamensis KCTC 13613 16S ribosomal RNA gene, partial sequence.	PQ764821	1474	1177185
124043	Bacillus siamensis strain KCTC 13613 strain PD-A10 16S ribosomal RNA gene, partial sequence.	MN577293	1466	659243
124043	Bacillus siamensis strain KCTC 13613 16S ribosomal RNA gene, partial sequence.	KY643639	1492	659243
124043	Bacillus siamensis KCTC 13613 16S ribosomal RNA gene, partial sequence.	PQ135913	1418	1177185
124043	Bacillus siamensis strain RAPG 3 16S ribosomal RNA gene, partial sequence.	PQ628374	1302	659243

GC content

@ref	GC-content (mol%)	Method
17960	41.4	high performance liquid chromatography (HPLC)
29694	41.4
17960	46.3	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacillus siamensis KCTC 13613 KCTC 13613(T)
NCBI: GCA_000262045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	79.40	no
125439	gram_stain	BacteriaNetⓘ	variable	80.30	no
125439	motility	BacteriaNetⓘ	no	58.80	no
125439	spore_formation	BacteriaNetⓘ	no	62.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus siamensis KCTC 13613
PATRIC: 1177185.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	81.09	yes
125438	anaerobic	anaerobicⓘ	no	90.95	no
125438	spore-forming	spore-formingⓘ	yes	96.13	yes
125438	aerobic	aerobicⓘ	yes	73.18	no
125438	thermophilic	thermophileⓘ	no	93.00	no
125438	flagellated	motile2+ⓘ	yes	87.30	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic and Functional Characterization of Bacillus siamensis B01 with Antimicrobial Activity Against Vibrio spp.	Nguyen CTK, Nguyen HD.	Curr Microbiol	10.1007/s00284-025-04483-9	2025
	Exploring the Phytobeneficial and Biocontrol Capacities of Endophytic Bacteria Isolated from Hybrid Vanilla Pods.	Lalanne-Tisne G, Barral B, Taibi A, Coulibaly ZK, Burguet P, Rasoarahona F, Quinton L, Meile JC, Boubakri H, Kodja H.	Microorganisms	10.3390/microorganisms11071754	2023
	Bacterial community shifts in Fusarium-induced avocado root rot and the antagonistic potential of Bacillus siamensis NB92.	Wang C, Song Z, Li X, Liu Q.	Front Microbiol	10.3389/fmicb.2025.1626537	2025
	Nigrospora oryzae Causing Leaf Spot Disease on Chrysanthemum × morifolium Ramat and Screening of Its Potential Antagonistic Bacteria.	Sha H, Liu X, Xiao X, Zhang H, Gu X, Chen W, Mao B.	Microorganisms	10.3390/microorganisms11092224	2023
	Isolation of Bacillus siamensis B-612, a Strain That Is Resistant to Rice Blast Disease and an Investigation of the Mechanisms Responsible for Suppressing Rice Blast Fungus.	Yang Y, Zhang Y, Zhang L, Zhou Z, Zhang J, Yang J, Gao X, Chen R, Huang Z, Xu Z, Li L.	Int J Mol Sci	10.3390/ijms24108513	2023
	Biochemical Characterization and Application of a Detergent Stable, Antimicrobial and Antibiofilm Potential Protease from Bacillus siamensis.	Tarek H, Nam KB, Kim YK, Suchi SA, Yoo JC.	Int J Mol Sci	10.3390/ijms24065774	2023
	The research on the identification, taxonomy, and comparative genomics analysis of nine Bacillus velezensis strains significantly contributes to microbiology, genetics, bioinformatics, and biotechnology.	Sousa EG, Campos GM, Viana MVC, Gomes GC, Rodrigues DLN, Aburjaile FF, Fonseca BB, de Araujo MRB, da Costa MM, Guedon E, Brenig B, Soares S, Azevedo V.	Front Microbiol	10.3389/fmicb.2025.1544934	2025
	Genomic and Experimental Analysis of the Biostimulant and Antagonistic Properties of Phytopathogens of Bacillus safensis and Bacillus siamensis.	Altimira F, Godoy S, Arias-Aravena M, Araya B, Montes C, Castro JF, Dardon E, Montenegro E, Pineda W, Viteri I, Tapia E.	Microorganisms	10.3390/microorganisms10040670	2022
	Intrinsic tet(L) sub-class in Bacillus velezensis and Bacillus amyloliquefaciens is associated with a reduced susceptibility toward tetracycline.	Nohr-Meldgaard K, Struve C, Ingmer H, Agerso Y.	Front Microbiol	10.3389/fmicb.2022.966016	2022
	Antimicrobial Effects of Potential Probiotics of Bacillus spp. Isolated from Human Microbiota: In Vitro and In Silico Methods.	Torres-Sanchez A, Pardo-Cacho J, Lopez-Moreno A, Ruiz-Moreno A, Cerk K, Aguilera M.	Microorganisms	10.3390/microorganisms9081615	2021
Genetics	Mining the nanotube-forming Bacillus amyloliquefaciens MR14M3 genome for determining anti-Candida auris and anti-Candida albicans potential by pathogenicity and comparative genomics analysis.	Borgio JF, Alhujaily R, Alquwaie R, Alabdullah MJ, AlHasani E, Alothman W, Alaqeel RK, Alfaraj AS, Kaabi A, Alhur NF, Akhtar S, AlJindan R, Almofty S, Almandil NB, AbdulAzeez S.	Comput Struct Biotechnol J	10.1016/j.csbj.2023.08.031	2023
Genetics	Genomic insights into the taxonomic status and bioactive gene cluster profiling of Bacillus velezensis RVMD2 isolated from desert rock varnish in Ma'an, Jordan.	Alnaimat SM, Abushattal S, Dmour SM, Al-Awaida WJ, Ayyash AM, Goh KW.	PLoS One	10.1371/journal.pone.0319345	2025
	Biodegradation Potential of Polyethylene Terephthalate by the Two Insect Gut Symbionts Xanthomonas sp. HY-74 and Bacillus sp. HY-75.	Kim JH, Lee SH, Lee BM, Son KH, Park HY.	Polymers (Basel)	10.3390/polym15173546	2023
	Whole Genome Sequencing of Bacillus velezensis AMR25, an Effective Antagonist Strain against Plant Pathogens.	Ananev AA, Ogneva ZV, Nityagovsky NN, Suprun AR, Kiselev KV, Aleynova OA.	Microorganisms	10.3390/microorganisms12081533	2024
	New Occurrence of Nigrospora oryzae Causing Leaf Blight in Ginkgo biloba in China and Biocontrol Screening of Endophytic Bacteria.	Tao Y, Yang C, Yu S, Fu F, Dai T.	Microorganisms	10.3390/microorganisms12112125	2024
Genetics	Bacillus cabrialesii subsp. cabrialesii Strain TE5: A Promising Biological Control Bacterium Against the Causal Agent of Spot Blotch in Wheat.	Campos-Avelar I, Garcia Jaime MF, Morales Sandoval PH, Parra-Cota FI, de Los Santos Villalobos S.	Plants (Basel)	10.3390/plants14020209	2025
	Bacillus spp. Isolated from Miang as Potential Probiotics in Nile Tilapia Culture-In Vitro Research.	Anyairo CS, Unban K, Wongputtisin P, Rojtinnakorn J, Shetty K, Khanongnuch C.	Microorganisms	10.3390/microorganisms12081687	2024
	Isolation and Identification of Endophytic Bacterium B5 from Mentha haplocalyx Briq. and Its Biocontrol Mechanisms Against Alternaria alternata-Induced Tobacco Brown Spot.	Qin Q, Liu B, Ma B, Wei X, Zhou Y, Sun Z.	J Fungi (Basel)	10.3390/jof11060446	2025
Genetics	Improving Beneficial Traits in Bacillus cabrialesii subsp. cabrialesii TE3^T through UV-Induced Genomic Changes.	Morales Sandoval PH, Ortega Urquieta ME, Valenzuela Ruiz V, Montanez Acosta K, Campos Castro KA, Parra Cota FI, Santoyo G, de Los Santos Villalobos S.	Plants (Basel)	10.3390/plants13182578	2024
	Plant growth-promoting bacteria as biological control agents for sustainable agriculture: targeting root-knot nematodes.	Mata AS, Cruz C, Gaspar JR, Abrantes I, Conceicao IL, Morais PV, Proenca DN.	Front Plant Sci	10.3389/fpls.2025.1567265	2025
Phylogeny	Diversity and antibacterial activity of endophytic bacteria associated with medicinal plant, Scrophularia striata.	Tavarideh F, Pourahmad F, Nemati M.	Vet Res Forum	10.30466/vrf.2021.529714.3174	2022
Metabolism	Genomics-guided discovery and structure identification of cyclic lipopeptides from the Bacillus siamensis JFL15.	Xu BH, Lu YQ, Ye ZW, Zheng QW, Wei T, Lin JF, Guo LQ.	PLoS One	10.1371/journal.pone.0202893	2018
Enzymology	Endophyte-mediated enhancement of salt resistance in Arachis hypogaea L. by regulation of osmotic stress and plant defense-related genes.	Liang Q, Tan D, Chen H, Guo X, Afzal M, Wang X, Tan Z, Peng G.	Front Microbiol	10.3389/fmicb.2024.1383545	2024
	Tannin-Tolerant and Extracellular Tannase Producing Bacillus Isolated from Traditional Fermented Tea Leaves and Their Probiotic Functional Properties.	Unban K, Kochasee P, Shetty K, Khanongnuch C.	Foods	10.3390/foods9040490	2020
	Optimizing the Growth Conditions of the Selected Plant-Growth-Promoting Rhizobacteria Paenibacillus sp. MVY-024 for Industrial Scale Production.	Kaziuniene J, Mazylyte R, Krasauskas A, Toleikiene M, Gegeckas A.	Biology (Basel)	10.3390/biology11050745	2022
	Food safety and biological control; genomic insights and antimicrobial potential of Bacillus velezensis FB2 against agricultural fungal pathogens.	Hammad M, Ali H, Hassan N, Tawab A, Salman M, Jawad I, de Jong A, Moreno CM, Kuipers OP, Feroz Y, Rashid MH.	PLoS One	10.1371/journal.pone.0291975	2023
Phylogeny	Diversity of Culturable Bacteria Isolated from Highland Barley Cultivation Soil in Qamdo, Tibet Autonomous Region.	Pan HU, Zhou J, Dawa Z, Dai Y, Zhang Y, Yang H, Wang C, Liu H, Zhou H, Lu X, Tian Y.	Pol J Microbiol	10.33073/pjm-2021-008	2021
	Bacillus strain BX77: a potential biocontrol agent for use against foodborne pathogens in alfalfa sprouts.	Gollop R, Kroupitski Y, Matz I, Chahar M, Shemesh M, Sela Saldinger S.	Front Plant Sci	10.3389/fpls.2024.1287184	2024
	Effect of volatile compounds produced by the cotton endophytic bacterial strain Bacillus sp. T6 against Verticillium wilt.	Zhang L, Wang Y, Lei S, Zhang H, Liu Z, Yang J, Niu Q.	BMC Microbiol	10.1186/s12866-022-02749-x	2023
	Comparative Study of Bacillus-Based Plant Biofertilizers: A Proposed Index.	Barros-Rodriguez A, Pacheco P, Penas-Corte M, Fernandez-Gonzalez AJ, Cobo-Diaz JF, Enrique-Cruz Y, Manzanera M.	Biology (Basel)	10.3390/biology13090668	2024
	Biomining Sesuvium portulacastrum for halotolerant PGPR and endophytes for promotion of salt tolerance in Vigna mungo L.	John JE, Maheswari M, Kalaiselvi T, Prasanthrajan M, Poornachandhra C, Rakesh SS, Gopalakrishnan B, Davamani V, Kokiladevi E, Ranjith S.	Front Microbiol	10.3389/fmicb.2023.1085787	2023
Enzymology	A Review on the Biotechnological Applications of the Operational Group Bacillus amyloliquefaciens.	Ngalimat MS, Yahaya RSR, Baharudin MMA, Yaminudin SM, Karim M, Ahmad SA, Sabri S.	Microorganisms	10.3390/microorganisms9030614	2021
	Diversity, distribution, and antagonistic activities of rhizobacteria of Panax notoginseng.	Fan ZY, Miao CP, Qiao XG, Zheng YK, Chen HH, Chen YW, Xu LH, Zhao LX, Guan HL.	J Ginseng Res	10.1016/j.jgr.2015.05.003	2016
	Biocontrol of tomato bacterial wilt by the new strain Bacillus velezensis FJAT-46737 and its lipopeptides.	Chen M, Wang J, Liu B, Zhu Y, Xiao R, Yang W, Ge C, Chen Z.	BMC Microbiol	10.1186/s12866-020-01851-2	2020
Transcriptome	Partial rpoB Gene Sequencing Identification and Probiotic Potential of Floricoccus penangensis ML061-4 Isolated from Assam Tea (Camellia sinensis var. assamica).	Rungsirivanich P, Inta A, Tragoolpua Y, Thongwai N.	Sci Rep	10.1038/s41598-019-52979-9	2019
Metabolism	Biodegradation and Removal of PAHs by Bacillus velezensis Isolated from Fermented Food.	Sultana OF, Lee S, Seo H, Mahmud HA, Kim S, Seo A, Kim M, Song HY.	J Microbiol Biotechnol	10.4014/jmb.2104.04023	2021
Phylogeny	Addition of plant-growth-promoting Bacillus subtilis PTS-394 on tomato rhizosphere has no durable impact on composition of root microbiome.	Qiao J, Yu X, Liang X, Liu Y, Borriss R, Liu Y.	BMC Microbiol	10.1186/s12866-017-1039-x	2017
	Study of Bacterial Community Composition and Correlation of Environmental Variables in Rambla Salada, a Hypersaline Environment in South-Eastern Spain.	Oueriaghli N, Castro DJ, Llamas I, Bejar V, Martinez-Checa F.	Front Microbiol	10.3389/fmicb.2018.01377	2018
Cultivation	Control Efficacy of Bacillus velezensis AFB2-2 against Potato Late Blight Caused by Phytophthora infestans in Organic Potato Cultivation.	Kim MJ, Shim CK, Park JH	Plant Pathol J	10.5423/PPJ.FT.09.2021.0138	2021
	Biofilm development of Bacillus siamensis ATKU1 on pristine short chain low-density polyethylene: A case study on microbe-microplastics interaction.	Tarafdar A, Lee JU, Jeong JE, Lee H, Jung Y, Oh HB, Woo HY, Kwon JH	J Hazard Mater	10.1016/j.jhazmat.2020.124516	2020
Phylogeny	Phylogenomic analysis shows that 'Bacillus vanillea' is a later heterotypic synonym of Bacillus siamensis.	Dunlap CA	Int J Syst Evol Microbiol	10.1099/ijsem.0.000444	2015
Genetics	Draft genome sequence of the plant growth-promoting bacterium Bacillus siamensis KCTC 13613T.	Jeong H, Jeong DE, Kim SH, Song GC, Park SY, Ryu CM, Park SH, Choi SK	J Bacteriol	10.1128/JB.00805-12	2012
Genetics	Bacillus ayatagriensis sp. nov., a novel plant growth-promoting rhizobacteria strain isolated from mulberry rhizosphere.	Das S, Mondal R, Mandal P, Kurt H, Chakraborty J, Islam MM, Sarkar B, Shaw S, Manna S, Arabaci N, Jangid K, Sadat A, Gangopadhyay D, Kati A, Mandal AK.	Sci Rep	10.1038/s41598-025-05508-w	2025
Phylogeny	Bacillus siamensis sp. nov., isolated from salted crab (poo-khem) in Thailand.	Sumpavapol P, Tongyonk L, Tanasupawat S, Chokesajjawatee N, Luxananil P, Visessanguan W	Int J Syst Evol Microbiol	10.1099/ijs.0.018879-0	2009

References

#17960	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25261
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29694	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26079 (see below)
#40433	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122594	Collection of Institut Pasteur ; Curators of the CIP; CIP 110217
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacillus siamensis (DSM 25261, BCC 22614, KACC 16244)

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