Name: Fictibacillus rigui WPCB074
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1301

Type strain:

Species: Fictibacillus rigui

Strain Designation: WPCB074

Culture col. no.: DSM 24778, CIP 110208, JCM 16348, KCTC 13278, BCRC 80434

Strain history: CIP <- 2010, JCM <- 2009, C.N. Seong, Sunchon Univ., Suncheon, Korea: strain WPCB074

NCBI tax ID(s): 554308 (species)

SI-ID 370642

JCM16348, KCTC 13278, CIP 110208

Section

Fictibacillus rigui WPCB074 is an aerobe, spore-forming, mesophilic bacterium that was isolated from fresh water.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Fictibacillus*
	Species	**Fictibacillus rigui**
	Full Scientific Name (LPSN)	Fictibacillus rigui (Baik et al. 2010) Glaeser et al. 2013

Synonym

Bacillus rigui

Information on morphological and physiological properties Morphology

[Ref.: #29661]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #122238]	Gram stain	positive

[Ref.: #29661]	Cell length	03-06 µm

[Ref.: #29661]	Cell width	0.5 µm

[Ref.: #29661]	Cell shape	rod-shaped
[Ref.: #122238]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #29661]	Motility	yes
[Ref.: #122238]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #29661]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17761]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17761]

Culture medium growth

[Ref.: #17761]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17761]

Culture medium composition

expand / minimize

[Ref.: #37583]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37583]

Culture medium growth

[Ref.: #37583]

Culture medium composition

expand / minimize

[Ref.: #122238]

Culture medium

CIP Medium 72

[Ref.: #122238]

Culture medium growth

[Ref.: #122238]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17761]	growth	30 °C
[Ref.: #29661]	growth	10-45 °C
[Ref.: #29661]	optimum	30-37 °C
[Ref.: #37583]	growth	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #17761]	Temperature range	mesophilic
[Ref.: #29661]	Temperature range	mesophilic
[Ref.: #37583]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29661]			optimum	07-08
[Ref.: #29661]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29661]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #122238]	Oxygen tolerance	obligate aerobe

[Ref.: #67771]	Type of spore	endospore
[Ref.: #67771]	Ability of spore formation	yes
[Ref.: #29661]	Ability of spore formation	yes
[Ref.: #122238]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29661]		NaCl		growth	0-9	%
[Ref.: #29661]		NaCl		optimum	01-02	%

[Ref.: #29661]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-7
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29661]	dextrin ChEBI	+	carbon source
[Ref.: #29661]	glycerol ChEBI	+	carbon source
[Ref.: #122238]	nitrite ChEBI	-	reduction
[Ref.: #29661]	tween 40 ChEBI	+	carbon source
[Ref.: #29661]	xylose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #122238]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #29661]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29661]	catalase	+	1.11.1.6
[Ref.: #122238]	catalase	+	1.11.1.6
[Ref.: #29661]	cytochrome oxidase	+	1.9.3.1
[Ref.: #122238]	oxidase	+
[Ref.: #122238]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17761]	Sample type/isolated from	fresh water
[Ref.: #17761]	Geographic location (country and/or sea, region)	Woopo wetland
[Ref.: #17761]	Country	Republic of Korea
[Ref.: #17761]	Country ISO 3 Code	KOR
[Ref.: #17761]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Freshwater of the Woopo wetland
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From fresh water
[Ref.: #67771]	Geographic location (country and/or sea, region)	Woopo wetland
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #122238]	Sample type/isolated from	Environment, Fresh water
[Ref.: #122238]	Geographic location (country and/or sea, region)	Woopo wetland
[Ref.: #122238]	Country	Republic of Korea
[Ref.: #122238]	Country ISO 3 Code	KOR
[Ref.: #122238]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Freshwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU939689 (>99% sequence identity) for Fictibacillus rigui from Microbeatlas

Aquatic Samples	15
Soil Samples	41
Animal Samples	16
Plant Samples	13
Total Samples	85

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17761]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122238]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17761]	Bacillus rigui strain WPCB074 16S ribosomal RNA gene, partial sequence	EU939689	1453	ENA	554308 tax ID

[Ref.: #17761]	GC-content	41.9 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29661]	GC-content	41.9 mol%

Availability in culture collections External links

[Ref.: #17761]

Culture collection no.

DSM 24778, CIP 110208, JCM 16348, KCTC 13278, BCRC 80434

[Ref.: #70952]

SI-ID 370642

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fictibacillus enclensis sp. nov., isolated from marine sediment.	Dastager SG, Mawlankar R, Srinivasan K, Tang SK, Lee JC, Ramana VV, Shouche YS	Antonie Van Leeuwenhoek	10.1007/s10482-013-0097-9	2013	*
Phylogeny	Fictibacillus phosphorivorans gen. nov., sp. nov. and proposal to reclassify Bacillus arsenicus, Bacillus barbaricus, Bacillus macauensis, Bacillus nanhaiensis, Bacillus rigui, Bacillus solisalsi and Bacillus gelatini in the genus Fictibacillus.	Glaeser SP, Dott W, Busse HJ, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.049171-0	2013	*
Phylogeny	Bacillus rigui sp. nov., isolated from wetland fresh water.	Baik KS, Lim CH, Park SC, Kim EM, Rhee MS, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.018184-0	2009	*
Phylogeny	Fictibacillus marinisediminis sp. nov., a nitrate-reducing bacterium isolated from marine sediment in Hupo Basin, Republic of Korea.	Cho ES, Hwang CY, Jung DH, Cha IT, Seo MJ	Arch Microbiol	10.1007/s00203-022-03067-6	2022	*

References

#17761

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24778

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29661

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26049 (see below)

#37583 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#70952

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370642.1 )

#122238 Collection of Institut Pasteur ; Curators of the CIP; CIP 110208

#26049

IJSEM 2204 2010 ( DOI 10.1099/ijs.0.018184-0 , PubMed 19897614 )

* These data were automatically processed and therefore are not curated

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