Neobacillus mesonae (DSM 25968, CGMCC 1.12238, FJAT-13985)

Name: Neobacillus mesonae (DSM 25968, CGMCC 1.12238, FJAT-13985)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130195

Type strain

Strain Designation FJAT-13985

Culture col. no. DSM 25968 CGMCC 1.12238 FJAT-13985

NCBI tax ID(s) 1193713

Special Collections DSMZ

History <- G. Liu, Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-13985

Links

Neobacillus mesonae FJAT-13985 is a bacterium that was isolated from Mesona chinensis root.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400739

DSM 25968

@ref 20215

Last LPSN update 2026-02-09 11:31:09

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Cytobacillaceae

Genus Neobacillus

Species Neobacillus mesonae

Full scientific name Neobacillus mesonae (Liu et al. 2014) Patel and Gupta 2020

Synonyms (1)

Bacillus mesonae

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21526	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21526	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		92.4
125438		93.419

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	vitamin K metabolism	100	5 of 5
66794	pentose phosphate pathway	100	11 of 11
66794	ribulose monophosphate pathway	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	lipoate biosynthesis	100	5 of 5
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	propanol degradation	100	7 of 7
66794	vitamin B1 metabolism	100	13 of 13
66794	palmitate biosynthesis	100	22 of 22
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	methylglyoxal degradation	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	acetate fermentation	100	4 of 4
66794	glycine betaine biosynthesis	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	alanine metabolism	96.55	28 of 29
66794	leucine metabolism	92.31	12 of 13
66794	proline metabolism	90.91	10 of 11
66794	starch degradation	90	9 of 10
66794	propionate fermentation	90	9 of 10
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	flavin biosynthesis	86.67	13 of 15
66794	heme metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	purine metabolism	85.11	80 of 94
66794	phenylalanine metabolism	84.62	11 of 13
66794	pyrimidine metabolism	84.44	38 of 45
66794	NAD metabolism	83.33	15 of 18
66794	glycolysis	82.35	14 of 17
66794	3-chlorocatechol degradation	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	4-hydroxyphenylacetate degradation	80	8 of 10
66794	citric acid cycle	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	arginine metabolism	75	18 of 24
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	ppGpp biosynthesis	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	vitamin B6 metabolism	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glutathione metabolism	71.43	10 of 14
66794	tryptophan metabolism	71.05	27 of 38
66794	Entner Doudoroff pathway	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	urea cycle	69.23	9 of 13
66794	non-pathway related	68.42	26 of 38
66794	degradation of hexoses	66.67	12 of 18
66794	methane metabolism	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	lipid metabolism	64.52	20 of 31
66794	oxidative phosphorylation	61.54	56 of 91
66794	cysteine metabolism	61.11	11 of 18
66794	degradation of pentoses	60.71	17 of 28
66794	creatinine degradation	60	3 of 5
66794	coenzyme M biosynthesis	60	6 of 10
66794	factor 420 biosynthesis	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	degradation of sugar alcohols	56.25	9 of 16
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	sulfate reduction	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	selenocysteine biosynthesis	50	3 of 6
66794	pantothenate biosynthesis	50	3 of 6
66794	suberin monomers biosynthesis	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	androgen and estrogen metabolism	50	8 of 16
66794	arachidonic acid metabolism	50	9 of 18
66794	phenol degradation	50	10 of 20
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	CMP-KDO biosynthesis	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	d-xylose degradation	45.45	5 of 11
66794	metabolism of disaccharids	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	allantoin degradation	44.44	4 of 9
66794	vitamin B12 metabolism	44.12	15 of 34
66794	tyrosine metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	ascorbate metabolism	40.91	9 of 22
66794	3-phenylpropionate degradation	40	6 of 15
66794	cellulose degradation	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	degradation of sugar acids	36	9 of 25
66794	lipid A biosynthesis	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	myo-inositol biosynthesis	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	cholesterol biosynthesis	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	catecholamine biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	carotenoid biosynthesis	22.73	5 of 22

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
21526	Mesona chinensis root	Mesona chinensis	Fujian Province, Fuzhou City, Fuqing County	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21526	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM163631v1 assembly for Neobacillus mesonae FJAT-13985	scaffold	GCA_001636315	1193713.4	2775507170	1193713	74.59

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21526	Bacillus mesonae strain FJAT-13985 16S ribosomal RNA gene, partial sequence	JQ927222	661		1193713
21526	Neobacillus mesonae strain FJAT-13985 16S ribosomal RNA gene, partial sequence	JX262263	1436		1193713

GC content

@ref	GC-content (mol%)	Method
21526	41.64	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Neobacillus mesonae FJAT-13985
NCBI: GCA_001636315

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	92.40	no
125439	motility	BacteriaNetⓘ	yes	74.90	no
125439	gram_stain	BacteriaNetⓘ	variable	85.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	84.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Neobacillus mesonae FJAT-13985
NCBI: GCA_001636315.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	67.02	no
125438	anaerobic	anaerobicⓘ	no	90.41	no
125438	aerobic	aerobicⓘ	yes	70.94	no
125438	spore-forming	spore-formingⓘ	yes	93.42	no
125438	thermophilic	thermophileⓘ	no	90.36	yes
125438	flagellated	motile2+ⓘ	yes	64.09	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Bacillus mesonae FJAT-13985T (=DSM 25968T) for Setting Up Phylogenomics in Genomic Taxonomy of the Bacillus-Like Bacteria.	Liu GH, Liu B, Zhu YJ, Wang JP, Che JM, Chen QQ, Chen Z	Genome Announc	10.1128/genomeA.00575-16	2016
Phylogeny	Bacillus depressus sp. nov., isolated from soil of a sunflower field.	Wei X, Xin D, Xin Y, Zhang H, Wang T, Zhang J	Antonie Van Leeuwenhoek	10.1007/s10482-015-0605-1	2015
Phylogeny	Bacillus mesonae sp. nov., isolated from the root of Mesona chinensis.	Liu B, Liu GH, Hu GH, Chen MC	Int J Syst Evol Microbiol	10.1099/ijs.0.059485-0	2014
Phylogeny	Neobacillus kokaensis sp. nov., isolated from soil.	Yuki K, Matsubara H, Yamaguchi S	Int J Syst Evol Microbiol	10.1099/ijsem.0.005253	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21526	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25968
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Neobacillus mesonae (DSM 25968, CGMCC 1.12238, FJAT-13985)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001636315

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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