Strain identifier
BacDive ID: 130195
Type strain: 
Species: Neobacillus mesonae
Strain Designation: FJAT-13985
Strain history: <- G. Liu, Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-13985
NCBI tax ID(s): 1193713 (species)
version 8.1 (current version)
General
@ref: 21526
BacDive-ID: 130195
DSM-Number: 25968
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Neobacillus mesonae FJAT-13985 is a mesophilic bacterium that was isolated from Mesona chinensis root.
NCBI tax id
- NCBI tax id: 1193713
- Matching level: species
strain history
- @ref: 21526
- history: <- G. Liu, Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-13985
doi: 10.13145/bacdive130195.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Neobacillus
- species: Neobacillus mesonae
- full scientific name: Neobacillus mesonae (Liu et al. 2014) Patel and Gupta 2020
synonyms
- @ref: 20215
- synonym: Bacillus mesonae
@ref: 21526
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Neobacillus
species: Neobacillus mesonae
full scientific name: Neobacillus mesonae (Liu et al. 2014) Patel and Gupta 2020
strain designation: FJAT-13985
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21526
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 21526
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21526
- sample type: Mesona chinensis root
- host species: Mesona chinensis
- geographic location: Fujian Province, Fuzhou City, Fuqing County
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Safety information
risk assessment
- @ref: 21526
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 21526 | Bacillus mesonae strain FJAT-13985 16S ribosomal RNA gene, partial sequence | JQ927222 | 661 | ena | 1193713 |
| 21526 | Bacillus mesonae strain FJAT-13985 16S ribosomal RNA gene, partial sequence | JX262263 | 1436 | ena | 1193713 |
Genome sequences
- @ref: 66792
- description: Neobacillus mesonae FJAT-13985
- accession: GCA_001636315
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1193713
GC content
- @ref: 21526
- GC-content: 41.64
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 71.825 | no |
| gram-positive | yes | 81.917 | no |
| anaerobic | no | 98.382 | no |
| aerobic | yes | 78.166 | no |
| halophile | no | 78.445 | no |
| spore-forming | yes | 92.735 | no |
| thermophile | no | 97.582 | yes |
| glucose-util | yes | 86.822 | no |
| motile | yes | 84.18 | no |
| glucose-ferment | no | 91.756 | no |
External links
@ref: 21526
culture collection no.: DSM 25968, CGMCC 1.12238
straininfo link
- @ref: 88744
- straininfo: 400739
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25013229 | Bacillus mesonae sp. nov., isolated from the root of Mesona chinensis. | Liu B, Liu GH, Hu GH, Chen MC | Int J Syst Evol Microbiol | 10.1099/ijs.0.059485-0 | 2014 | Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genotype, Lamiaceae/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 26452774 | Bacillus depressus sp. nov., isolated from soil of a sunflower field. | Wei X, Xin D, Xin Y, Zhang H, Wang T, Zhang J | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0605-1 | 2015 | Bacillus/*classification/genetics/growth & development/*isolation & purification, Bacterial Typing Techniques, Base Composition, Benzoquinones/chemistry, Cell Wall/chemistry, China, DNA, Bacterial/analysis/genetics, Diaminopimelic Acid/analysis, Fatty Acids/chemistry, Glycerophospholipids/chemistry, Helianthus/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Sequence Analysis, DNA, *Soil Microbiology | Transcriptome |
| Genetics | 27313309 | Draft Genome Sequence of Bacillus mesonae FJAT-13985T (=DSM 25968T) for Setting Up Phylogenomics in Genomic Taxonomy of the Bacillus-Like Bacteria. | Liu GH, Liu B, Zhu YJ, Wang JP, Che JM, Chen QQ, Chen Z | Genome Announc | 10.1128/genomeA.00575-16 | 2016 | Phylogeny | |
| Phylogeny | 35192452 | Neobacillus kokaensis sp. nov., isolated from soil. | Yuki K, Matsubara H, Yamaguchi S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005253 | 2022 | Bacillaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21526 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25968 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25968) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 88744 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400739.1 |