Name: Acidithiobacillus caldus C-SH12
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 127

Type strain:

Species: Acidithiobacillus caldus

Strain Designation: C-SH12

Culture col. no.: DSM 9466

Strain history: <- B. M. Goebel; C-SH12 <- B. M. Goebel {1991}

NCBI tax ID(s): 33059 (species)

SI-ID 48622

DSM 9466

Special Collections

DSMZ

Other strains from Acidithiobacillus caldus

Section

Acidithiobacillus caldus C-SH12 is a motile bacterium that was isolated from continuous bioleaching reactor.

motile
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Acidithiobacillia*
	Order	*Acidithiobacillales*
	Family	*Acidithiobacillaceae*
	Genus	*Acidithiobacillus*
	Species	**Acidithiobacillus caldus**
	Full Scientific Name (LPSN)	Acidithiobacillus caldus (Hallberg and Lindström 1995) Kelly and Wood 2000

	Synonym	"Fervidacidithiobacillus* caldus"*
	Synonym	Thiobacillus caldus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.47

[Ref.: #3584]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3584]

Culture medium

ACIDIFERROBACTER (MS) MEDIUM (DSMZ Medium 670)

[Ref.: #3584]

Culture medium growth

[Ref.: #3584]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3584]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3584]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3584]	Sample type/isolated from	continuous bioleaching reactor
[Ref.: #3584]	Country	Australia
[Ref.: #3584]	Country ISO 3 Code	AUS
[Ref.: #3584]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Engineered	#Bioreactor	-
#Engineered	#Other	#Mine
#Engineered	#Industrial	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3584]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acidithiobacillus caldus C-SH12	GCA_018854145	contig	GenBank ENA	33059 tax ID	*

[Ref.: #3584]

GC-content

61.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidithiobacillus caldus C-SH12 NCBI: GCA_018854145.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.47	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	85.487	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	57.883	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.199	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.149	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	53.859	no

Availability in culture collections External links

[Ref.: #3584]

Culture collection no.

DSM 9466

[Ref.: #69810]

SI-ID 48622

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Presence of a family of plasmids (29 to 65 kilobases) with a 26-kilobase common region in different strains of the sulfur-oxidizing bacterium Acidithiobacillus caldus.	van Zyl LJ, Deane SM, Louw LA, Rawlings DE	Appl Environ Microbiol	10.1128/AEM.00864-08	2008	*
Metabolism	Analysis of community composition during moderately thermophilic bioleaching of pyrite, arsenical pyrite, and chalcopyrite.	Dopson M, Lindstrom EB	Microb Ecol	10.1007/s00248-003-2028-1	2004	*
Biotechnology	Potential role of thiobacillus caldus in arsenopyrite bioleaching	Dopson M, Lindstrom EB	Appl Environ Microbiol	10.1128/AEM.65.1.36-40.1999	1999	*
	Multiple Serotypes of the Moderate Thermophile Thiobacillus caldus, a Limitation of Immunological Assays for Biomining Microorganisms.	Hallberg KB, Lindstrom EB	Appl Environ Microbiol	10.1128/aem.62.11.4243-4246.1996	1996	*

References

#3584

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9466

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69810

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48622.1 )

* These data were automatically processed and therefore are not curated

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