Strain identifier
BacDive ID: 127
Type strain: 
Species: Acidithiobacillus caldus
Strain Designation: C-SH12
Strain history: <- B. M. Goebel; C-SH12 <- B. M. Goebel {1991}
NCBI tax ID(s): 33059 (species)
version 9.1 (current version)
General
@ref: 3584
BacDive-ID: 127
DSM-Number: 9466
keywords: genome sequence, Bacteria, motile
description: Acidithiobacillus caldus C-SH12 is a motile bacterium that was isolated from continuous bioleaching reactor.
NCBI tax id
- NCBI tax id: 33059
- Matching level: species
strain history
- @ref: 3584
- history: <- B. M. Goebel; C-SH12 <- B. M. Goebel {1991}
doi: 10.13145/bacdive127.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Acidithiobacillia
- order: Acidithiobacillales
- family: Acidithiobacillaceae
- genus: Acidithiobacillus
- species: Acidithiobacillus caldus
- full scientific name: Acidithiobacillus caldus (Hallberg and Lindström 1995) Kelly and Wood 2000
synonyms
@ref synonym 20215 Fervidacidithiobacillus caldus 20215 Thiobacillus caldus
@ref: 3584
domain: Bacteria
phylum: Proteobacteria
class: Acidithiobacillia
order: Acidithiobacillales
family: Acidithiobacillaceae
genus: Acidithiobacillus
species: Acidithiobacillus caldus
full scientific name: Acidithiobacillus caldus (Hallberg and Lindström 1995) Kelly and Wood 2000
strain designation: C-SH12
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 97.47
colony morphology
- @ref: 3584
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 3584
- name: ACIDIFERROBACTER (MS) MEDIUM (DSMZ Medium 670)
- growth: yes
- link: https://mediadive.dsmz.de/medium/670
- composition: Name: ACIDIFERROBACTER (MS) MEDIUM (DSMZ Medium 670; with strain-specific modifications) Composition: Sulfur powder 5.0 g/l (NH4)2SO4 2.0 g/l MgSO4 x 7 H2O 0.25 g/l Yeast extract 0.2 g/l KCl 0.1 g/l K2HPO4 0.1 g/l Distilled water
culture temp
- @ref: 3584
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 3584
- sample type: continuous bioleaching reactor
- country: Australia
- origin.country: AUS
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Bioreactor | |
| #Engineered | #Other | #Mine |
| #Engineered | #Industrial |
Safety information
risk assessment
- @ref: 3584
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Acidithiobacillus caldus C-SH12
- accession: GCA_018854145
- assembly level: contig
- database: ncbi
- NCBI tax ID: 33059
GC content
- @ref: 3584
- GC-content: 61.3
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.47 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 85.487 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 57.883 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.199 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 91.149 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 53.859 | no |
External links
@ref: 3584
culture collection no.: DSM 9466
straininfo link
- @ref: 69810
- straininfo: 48622
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Biotechnology | 9872756 | Potential role of thiobacillus caldus in arsenopyrite bioleaching | Dopson M, Lindstrom EB | Appl Environ Microbiol | 10.1128/AEM.65.1.36-40.1999 | 1999 | ||
| Metabolism | 15085303 | Analysis of community composition during moderately thermophilic bioleaching of pyrite, arsenical pyrite, and chalcopyrite. | Dopson M, Lindstrom EB | Microb Ecol | 10.1007/s00248-003-2028-1 | 2004 | Arsenicals/metabolism, Bacteria/*genetics, *Bacterial Physiological Phenomena, Base Sequence, Cluster Analysis, *Coal Mining, Copper/metabolism, DNA Primers, *Ecosystem, Hot Temperature, Iron/metabolism, Likelihood Functions, Models, Genetic, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfides/metabolism | Phylogeny |
| 16535449 | Multiple Serotypes of the Moderate Thermophile Thiobacillus caldus, a Limitation of Immunological Assays for Biomining Microorganisms. | Hallberg KB, Lindstrom EB | Appl Environ Microbiol | 10.1128/aem.62.11.4243-4246.1996 | 1996 | |||
| Phylogeny | 18515486 | Presence of a family of plasmids (29 to 65 kilobases) with a 26-kilobase common region in different strains of the sulfur-oxidizing bacterium Acidithiobacillus caldus. | van Zyl LJ, Deane SM, Louw LA, Rawlings DE | Appl Environ Microbiol | 10.1128/AEM.00864-08 | 2008 | Acidithiobacillus/*classification/*genetics, Australia, Chromosome Mapping, Cloning, Molecular, DNA Transposable Elements, DNA, Bacterial/genetics, Open Reading Frames, Plasmids/*classification/*genetics/isolation & purification, Replicon, Restriction Mapping, Sequence Analysis, DNA, South Africa, Sulfur-Reducing Bacteria/classification/genetics | Enzymology |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3584 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9466) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9466 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69810 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48622.1 | StrainInfo: A central database for resolving microbial strain identifiers |