Pseudoalteromonas distincta (DSM 26439, ATCC BAA-322, KMM 3548)

Name: Pseudoalteromonas distincta (DSM 26439, ATCC BAA-322, KMM 3548)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12692

Type strain

Culture col. no. DSM 26439 ATCC BAA-322 KMM 3548 LMG 19694

NCBI tax ID(s) 77608

Special Collections DSMZ

Links

Pseudoalteromonas distincta DSM 26439 is a mesophilic prokaryote that was isolated from sponge Paragorgia arborea.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 264387

LMG 19696,DSM 26439,ATCC BAA-322,DSM 14403,CIP 107732

@ref 20215

Last LPSN update 2025-12-16 09:49:54

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Pseudoalteromonadaceae

Genus Pseudoalteromonas

Species Pseudoalteromonas distincta

Full scientific name Pseudoalteromonas distincta (Romanenko et al. 1995) Ivanova et al. 2000

Synonyms (4)

Pseudoalteromonas elyakovii
Alteromonas elyakovii
Pseudoalteromonas paragorgicola
Alteromonas distincta

BacDive ID	Other strains from **Pseudoalteromonas distincta** (1)	Type strain
131079	P. distincta DSM 12749, ATCC 700518, CIP 105340, KMM 638, ... (type strain)

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.4
125438	negative	100

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18223	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
42045	Marine agar (MA)			Distilled water make up to (1000.000 ml);Marine agar (55.100 g)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
18223	positive	growth	28	mesophilic
42045	positive	growth	20	psychrophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.3

Spore formation

@ref	Spore formation	Confidence
125439		99.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Porifera (Sponges)

Isolation

@ref	Sample type	Host species	Geographic location
18223	sponge Paragorgia arborea	Paragorgia arborea	Kuril Islands, Onekotan

Taxonmaps

69479

Global distribution of 16S sequence AY040229 (>99% sequence identity) for Pseudoalteromonas from Microbeatlas

Aquatic Samples	2792
Soil Samples	24
Animal Samples	384
Plant Samples	22
Total Samples	3222

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18223	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1491831v1 assembly for Pseudoalteromonas distincta KMM 3548	chromosome	GCA_014918315	1315279.3	2937444022	1315279	84.96

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18223	Pseudoalteromonas sp. KMM 3548 16S ribosomal RNA gene, partial sequence	AY040229	1506		166934

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudoalteromonas paragorgicola KMM 3548
PATRIC: 1315279.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	68.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudoalteromonas paragorgicola KMM 3548 KMM 3548
NCBI: GCA_014918315.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	94.71	no
125438	aerobic	aerobicⓘ	yes	74.23	no
125438	spore-forming	spore-formingⓘ	no	86.23	no
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	flagellated	motile2+ⓘ	yes	87.67	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Decomposition of brown algae in the ocean by microbiota: biological insights for recycling blue carbon.	Katsuhiro N, Sato K, Takase R, Kawai S, Ogura K, Hashimoto W.	Biosci Biotechnol Biochem	10.1093/bbb/zbae126	2024
Phenotype	Computational Insight into Intraspecies Distinctions in Pseudoalteromonas distincta: Carotenoid-like Synthesis Traits and Genomic Heterogeneity.	Balabanova L, Nedashkovskaya O, Otstavnykh N, Isaeva M, Kolpakova O, Pentehina I, Seitkalieva A, Noskova Y, Stepochkina V, Son O, Tekutyeva L.	Int J Mol Sci	10.3390/ijms24044158	2023
Enzymology	Membrane Vesicles Can Contribute to Cellulose Degradation by Teredinibacter turnerae, a Cultivable Intracellular Endosymbiont of Shipworms.	Gasser MT, Liu A, Altamia MA, Brensinger BR, Brewer SL, Flatau R, Hancock ER, Preheim SP, Filone CM, Distel DL.	Microb Biotechnol	10.1111/1751-7915.70064	2024
	Crystal Structure of Bifidobacterium bifidum Glycoside Hydrolase Family 110 alpha-Galactosidase Specific for Blood Group B Antigen.	Kashima T, Akama M, Wakinaka T, Arakawa T, Ashida H, Fushinobu S.	J Appl Glycosci (1999)	10.5458/jag.jag.jag-2024_0005	2024
	Unraveling the Diverse Profile of N-Acyl Homoserine Lactone Signals and Their Role in the Regulation of Biofilm Formation in Porphyra haitanensis-Associated Pseudoalteromonas galatheae.	Aslam M, Pei P, Ye P, Li T, Liang H, Zhang Z, Ke X, Chen W, Du H.	Microorganisms	10.3390/microorganisms11092228	2023
	Synthesis and Stereocontrolled Equatorially Selective Glycosylation Reactions of a Pseudaminic Acid Donor: Importance of the Side-Chain Conformation and Regioselective Reduction of Azide Protecting Groups.	Dhakal B, Crich D.	J Am Chem Soc	10.1021/jacs.8b09654	2018
Pathogenicity	New Benthic Cyanobacteria from Guadeloupe Mangroves as Producers of Antimicrobials.	Duperron S, Beniddir MA, Durand S, Longeon A, Duval C, Gros O, Bernard C, Bourguet-Kondracki ML.	Mar Drugs	10.3390/md18010016	2019
	Genomic Analysis of Two Cold-Active Pseudoalteromonas Phages Isolated from the Continental Shelf in the Arctic Ocean.	Hwang CY, Cho BC, Kang JK, Park J, Hardies SC.	Viruses	10.3390/v15102061	2023
	Structure of an acidic polysaccharide from a marine bacterium Pseudoalteromonas distincta KMM 638 containing 5-acetamido-3,5,7,9-tetradeoxy-7-formamido-L-glycero-L-manno-nonulosonic acid.	Muldoon J, Shashkov AS, Senchenkova SN, Tomshich SV, Komandrova NA, Romanenko LA, Knirel YA, Savage AV.	Carbohydr Res	10.1016/s0008-6215(00)00280-9	2001
Pathogenicity	Structure and in vitro Bioactivity against Cancer Cells of the Capsular Polysaccharide from the Marine Bacterium Psychrobacter marincola.	Kokoulin MS, Kuzmich AS, Romanenko LA, Chikalovets IV, Chernikov OV.	Mar Drugs	10.3390/md18050268	2020
Phylogeny	Reclassification of Alteromonas distincta Romanenko et al. 1995 as Pseudoalteromonas distincta comb. nov.	Ivanova EP, Chun J, Romanenko LA, Matte ME, Mikhailov VV, Frolova GM, Huq A, Colwell RR.	Int J Syst Evol Microbiol	10.1099/00207713-50-1-141	2000
	Diversity and distribution of the bmp gene cluster and its Polybrominated products in the genus Pseudoalteromonas.	Busch J, Agarwal V, Schorn M, Machado H, Moore BS, Rouse GW, Gram L, Jensen PR.	Environ Microbiol	10.1111/1462-2920.14532	2019
	Microbial origin of bioflocculation components within a promising natural bioflocculant resource of Ruditapes philippinarum conglutination mud from an aquaculture farm in Zhoushan, China.	Mu J, Cui X, Shao M, Wang Y, Yang Q, Yang G, Zheng L.	PLoS One	10.1371/journal.pone.0217679	2019
Enzymology	Molecular Cloning and Characterization of a Novel alpha-Amylase from Antarctic Sea Ice Bacterium Pseudoalteromonas sp. M175 and Its Primary Application in Detergent.	Wang X, Kan G, Ren X, Yu G, Shi C, Xie Q, Wen H, Betenbaugh M.	Biomed Res Int	10.1155/2018/3258383	2018
	Antarctic marine bacterium Pseudoalteromonas sp. KNOUC808 as a source of cold-adapted lactose hydrolyzing enzyme.	Nam E, Ahn J.	Braz J Microbiol	10.1590/s1517-838220110003000011	2011
Phylogeny	Genome-Based Classification of Strain 16-SW-7, a Marine Bacterium Capable of Converting B Red Blood Cells, as Pseudoalteromonas distincta and Proposal to Reclassify Pseudoalteromonas paragorgicola as a Later Heterotypic Synonym of Pseudoalteromonas distincta.	Nedashkovkaya OI, Kim SG, Balabanova LA, Zhukova NV, Son OM, Tekutyeva LA, Mikhailov VV	Front Microbiol	10.3389/fmicb.2021.809431	2022
Phylogeny	Psychrosphaera algicola sp. nov. and Paraglaciecola algarum sp. nov., and reclassification of Pseudoalteromonas elyakovii, Pseudoalteromonas flavipulchra, and Pseudoalteromonas profundi as later heterotypic synonyms of P. distincta, P. maricaloris, and P. gelatinilytica.	Bayburt H, Choi BJ, Kim JM, Baek JH, Jeon CO.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006491	2024
Phylogeny	Characterization of Pseudoalteromonas distincta-like sea-water isolates and description of Pseudoalteromonas aliena sp. nov.	Ivanova EP, Gorshkova NM, Zhukova NV, Lysenko AM, Zelepuga EA, Prokof'eva NG, Mikhailov VV, Nicolau DV, Christen R.	Int J Syst Evol Microbiol	10.1099/ijs.0.03053-0	2004
Phylogeny	Pseudoalteromonas agarivorans sp. nov., a novel marine agarolytic bacterium.	Romanenko LA, Zhukova NV, Rohde M, Lysenko AM, Mikhailov VV, Stackebrandt E.	Int J Syst Evol Microbiol	10.1099/ijs.0.02234-0	2003
Phylogeny	Pseudoalteromonas translucida sp. nov. and Pseudoalteromonas paragorgicola sp. nov., and emended description of the genus.	Ivanova EP, Sawabe T, Lysenko AM, Gorshkova NM, Hayashi K, Zhukova NV, Nicolau DV, Christen R, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1759	2002

References

#18223	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26439
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42045	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudoalteromonas distincta (DSM 26439, ATCC BAA-322, KMM 3548)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014918315

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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