Strain identifier
BacDive ID: 12692
Type strain: 
Species: Pseudoalteromonas distincta
Strain history: 2002, E. Ivanova, Swinburne Inst., Victoria, Australia
NCBI tax ID(s): 77608 (species)
version 9.3 (current version)
General
@ref: 18223
BacDive-ID: 12692
DSM-Number: 26439
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Pseudoalteromonas distincta DSM 26439 is a mesophilic, Gram-negative bacterium that was isolated from sponge Paragorgia arborea.
NCBI tax id
- NCBI tax id: 77608
- Matching level: species
strain history
| @ref | history |
|---|---|
| 18223 | <- LMG <- E. Ivanova, Russian Academy of Sciences |
| 42045 | 2002, E. Ivanova, Swinburne Inst., Victoria, Australia |
doi: 10.13145/bacdive12692.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Pseudoalteromonadaceae
- genus: Pseudoalteromonas
- species: Pseudoalteromonas distincta
- full scientific name: Pseudoalteromonas distincta (Romanenko et al. 1995) Ivanova et al. 2000
synonyms
@ref synonym 20215 Pseudoalteromonas elyakovii 20215 Alteromonas elyakovii 20215 Alteromonas distincta 20215 Pseudoalteromonas paragorgicola
@ref: 18223
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas paragorgicola
full scientific name: Pseudoalteromonas paragorgicola Ivanova et al. 2002
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | negative | 99.4 |
| 125438 | negative | 100 |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 18223 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| 42045 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 18223 | positive | growth | 28 |
| 42045 | positive | growth | 20 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 99.3
spore formation
- @ref: 125439
- spore formation: no
- confidence: 99.4
Isolation, sampling and environmental information
isolation
- @ref: 18223
- sample type: sponge Paragorgia arborea
- host species: Paragorgia arborea
- geographic location: Kuril Islands, Onekotan
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Porifera (Sponges)
taxonmaps
- @ref: 69479
- File name: preview.99_1002.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_57;96_122;97_129;98_145;99_1002&stattab=map
- Last taxonomy: Pseudoalteromonas
- 16S sequence: AY040229
- Sequence Identity:
- Total samples: 3222
- soil counts: 24
- aquatic counts: 2792
- animal counts: 384
- plant counts: 22
Safety information
risk assessment
- @ref: 18223
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18223
- description: Pseudoalteromonas sp. KMM 3548 16S ribosomal RNA gene, partial sequence
- accession: AY040229
- length: 1506
- database: nuccore
- NCBI tax ID: 166934
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudoalteromonas distincta KMM 3548 | GCA_014918315 | chromosome | ncbi | 1315279 |
| 66792 | Pseudoalteromonas paragorgicola KMM 3548 | 1315279.3 | wgs | patric | 1315279 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.708 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 74.231 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 86.226 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 87.669 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 68.5 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.4 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.3 |
External links
@ref: 18223
culture collection no.: DSM 26439, ATCC BAA-322, KMM 3548, LMG 19694
straininfo link
- @ref: 81904
- straininfo: 264387
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 12361284 | Pseudoalteromonas translucida sp. nov. and Pseudoalteromonas paragorgicola sp. nov., and emended description of the genus. | Ivanova EP, Sawabe T, Lysenko AM, Gorshkova NM, Hayashi K, Zhukova NV, Nicolau DV, Christen R, Mikhailov VV | Int J Syst Evol Microbiol | 10.1099/00207713-52-5-1759 | 2002 | Animals, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phenotype, Phylogeny, Porifera/microbiology, Pseudoalteromonas/*classification/genetics/isolation & purification/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Species Specificity | Genetics |
| Phylogeny | 35222308 | Genome-Based Classification of Strain 16-SW-7, a Marine Bacterium Capable of Converting B Red Blood Cells, as Pseudoalteromonas distincta and Proposal to Reclassify Pseudoalteromonas paragorgicola as a Later Heterotypic Synonym of Pseudoalteromonas distincta. | Nedashkovkaya OI, Kim SG, Balabanova LA, Zhukova NV, Son OM, Tekutyeva LA, Mikhailov VV | Front Microbiol | 10.3389/fmicb.2021.809431 | 2022 |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18223 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26439) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26439 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 42045 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5200 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 81904 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID264387.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |