Name: Algicola sagamiensis B-10-31
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12675

Type strain:

Species: Algicola sagamiensis

Strain Designation: B-10-31

Culture col. no.: DSM 14643, JCM 11461, CIP 108220

Strain history: CIP <- 2003, JCM <- 2001, C. Imada: strain B-10-31

NCBI tax ID(s): 1120963 (strain), 163869 (species)

SI-ID 128010

DSM 14643, JCM 11461, CIP 108220

Section

Algicola sagamiensis B-10-31 is a mesophilic, motile bacterium that was isolated from neritic sea water.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Algicola*
	Species	**Algicola sagamiensis**
	Full Scientific Name (LPSN)	Algicola sagamiensis (Kobayashi et al. 2003) Nam et al. 2007

Synonym

Pseudoalteromonas sagamiensis

Information on morphological and physiological properties Morphology

[Ref.: #122347]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.987

[Ref.: #122347]	Cell shape	rod-shaped

[Ref.: #122347]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %95.219

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5428]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5428]

Culture medium growth

[Ref.: #5428]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5428]

Culture medium composition

expand / minimize

[Ref.: #33917]

Culture medium

Marine agar (MA)

[Ref.: #33917]

Culture medium growth

[Ref.: #33917]

Culture medium composition

expand / minimize

[Ref.: #122347]

Culture medium

CIP Medium 13

[Ref.: #122347]

Culture medium growth

[Ref.: #122347]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5428]		growth	28 °C
[Ref.: #33917]		growth	25 °C
[Ref.: #67770]		growth	27 °C
[Ref.: #122347]		growth	25-30 °C
[Ref.: #122347]	no	growth	5 °C
[Ref.: #122347]	no	growth	10 °C
[Ref.: #122347]	no	growth	37 °C
[Ref.: #122347]	no	growth	41 °C

[Ref.: #5428]	Temperature range	mesophilic
[Ref.: #33917]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #122347]	Temperature range	mesophilic
[Ref.: #122347]	Temperature range	psychrophilic
[Ref.: #122347]	Temperature range	mesophilic
[Ref.: #122347]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %97
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.985

[Ref.: #67770]

Name of produced compound

monastatin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #122347]		NaCl		growth	2-10	%
[Ref.: #122347]		NaCl	no	growth	0	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122347]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122347]	nitrate ChEBI	-	reduction
[Ref.: #122347]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #122347]	indole ChEBI	no
[Ref.: #67770]	leupeptin ChEBI	yes
[Ref.: #67770]	marinostatin	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122347]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122347]	amylase	-
[Ref.: #122347]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122347]	caseinase	+	3.4.21.50
[Ref.: #122347]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #122347]	gelatinase	+
[Ref.: #122347]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122347]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122347]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122347]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122347]	oxidase	-
[Ref.: #122347]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122347]	tryptophan deaminase	-
[Ref.: #122347]	tween esterase	+
[Ref.: #122347]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #122347]	11224	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+/-	-	-	-	-	-	-	-	+/-	+/-	-	-	-	-	+/-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	+/-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122347]	10996	-	+	+	-	-	+	-	+	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5428]	Sample type/isolated from	neritic sea water
[Ref.: #5428]	Geographic location (country and/or sea, region)	Kanagawa Prefecture, Aburatsubo Inlet of Sagami Bay
[Ref.: #5428]	Country	Japan
[Ref.: #5428]	Country ISO 3 Code	JPN
[Ref.: #5428]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Coastal seawater at the Aburatsubo Inlet of Sagami Bay
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kanagawa Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #122347]	Sample type/isolated from	Environment, Sea water
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5428]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122347]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5428]	Algicola sagamiensis gene for 16S rRNA	AB063324	1498	ENA	163869 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Algicola sagamiensis DSM 14643	GCA_000374485	scaffold	GenBank	1120963 tax ID
[Ref.: #66792]	Algicola sagamiensis DSM 14643	1120963.3	wgs	PATRIC	1120963 tax ID	*
[Ref.: #66792]	Algicola sagamiensis DSM 14643	2519899678	draft	JGI IMG/M	1120963 tax ID	*

[Ref.: #5428]	GC-content	42.0 mol%
[Ref.: #67770]	GC-content	42 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Algicola sagamiensis DSM 14643 DSM 14643 NCBI: GCA_000374485.1
[Ref.: #69481]	spore-forming	no	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algicola sagamiensis DSM 14643 PATRIC: 1120963.3
[Ref.: #69480]	motile	yes	90.884	no
[Ref.: #69480]	flagellated	yes	81.808	no
[Ref.: #69480]	gram-positive	no	98.612	no
[Ref.: #69480]	anaerobic	no	98.766	no
[Ref.: #69480]	aerobic	yes	86.134	no
[Ref.: #69480]	halophile	no	50	no
[Ref.: #69480]	spore-forming	no	92.539	no
[Ref.: #69480]	glucose-util	yes	82.913	no
[Ref.: #69480]	thermophile	no	97.119	yes
[Ref.: #69480]	glucose-ferment	no	72.194	no

Availability in culture collections External links

[Ref.: #5428]

Culture collection no.

DSM 14643, JCM 11461, CIP 108220

[Ref.: #81886]

SI-ID 128010

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algibacillus agarilyticus gen. nov., sp. nov., isolated from the surface of the red algae Gelidium amansii.	Meng X, Chang YQ, Wang H, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004558	2020	*
Phylogeny	Pseudoalteromonas marina sp. nov., a marine bacterium isolated from tidal flats of the Yellow Sea, and reclassification of Pseudoalteromonas sagamiensis as Algicola sagamiensis comb. nov.	Nam YD, Chang HW, Park JR, Kwon HY, Quan ZX, Park YH, Lee JS, Yoon JH, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.64523-0	2007	*
Phylogeny	Pseudoalteromonas sagamiensis sp. nov., a marine bacterium that produces protease inhibitors.	Kobayashi T, Imada C, Hiraishi A, Tsujibo H, Miyamoto K, Inamori Y, Hamada N, Watanabe E	Int J Syst Evol Microbiol	10.1099/ijs.0.02516-0	2003	*

References

#5428

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14643

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33917 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81886

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID128010.1 )

#122347 Collection of Institut Pasteur ; Curators of the CIP; CIP 108220
* These data were automatically processed and therefore are not curated

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Algicola sagamiensis DSM 14643 DSM 14643

Algicola sagamiensis DSM 14643

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