Granulicoccus phenolivorans (DSM 17626, ATCC BAA-1292, CIP 109593)

Name: Granulicoccus phenolivorans (DSM 17626, ATCC BAA-1292, CIP 109593)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12620

Type strain

Strain Designation PG-02

Culture col. no. DSM 17626 ATCC BAA-1292 CIP 109593 JCM 15570 NBRC 107789 1 more

NCBI tax ID(s) 1121933 266854

Special Collections DSMZ JCM CIP Wink compendium Literature strains

History <- A.M. Maszenan <- He Long Jiang, PG-02 DSM 17626 <-- A. M. Maszenan <-- H. L. Jiang PG-02.

Links

Granulicoccus phenolivorans PG-02 is a facultative anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from aerobic granules, bioremidation of phenolic wastewater.

Gram-positive coccus-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403354

JCM 15570,NBRC 107789,DSM 17626

@ref 20215

Last LPSN update 2026-02-09 11:20:53

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Propionibacteriaceae

Genus Granulicoccus

Species Granulicoccus phenolivorans

Full scientific name Granulicoccus phenolivorans Maszenan et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape	Confidence
31932	positive	0.3-1.4 µm	coccus-shaped
125438				92.6
125438	positive			91.789
125439	positive			93.6

Colony morphology

@ref	Colony color	Incubation period	Medium used
18407	Beige (1001)	10-14 days	ISP 2
18407	Beige (1001)	10-14 days	ISP 3
18407	Beige (1001)	10-14 days	ISP 4
18407	Beige (1001)	10-14 days	ISP 5
18407	Beige (1001)	10-14 days	ISP 6
18407	Beige (1001)	10-14 days	ISP 7

Multicellular morphology

@ref	Forms multicellular complex	Medium name
18407		ISP 2
18407		ISP 3
18407		ISP 4
18407		ISP 5
18407		ISP 6
18407		ISP 7

Multimedia

@ref:	66793
multimedia content:	EM_DSM_17626_1.jpg
multimedia.multimedia content:	EM_DSM_17626_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_17626_2.jpg
multimedia.multimedia content:	EM_DSM_17626_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_17626_3.jpg
multimedia.multimedia content:	EM_DSM_17626_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_17626_4.jpg
multimedia.multimedia content:	EM_DSM_17626_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_17626_5.jpg
multimedia.multimedia content:	EM_DSM_17626_5.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6916	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
18407	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
18407	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
18407	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
18407	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
18407	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
18407	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes

Culture temp

@ref	Growth	Type	Temperature (°C)
6916	positive	growth	28
18407	positive	optimum	28
31932	positive	growth	15-37
31932	positive	optimum	30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
31932	positive	optimum	7
31932	positive	growth	5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

31932

Oxygen tolerancefacultative anaerobe

Spore formation

31932

Spore formationno

Observation

67770

Observationquinones: MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31932	16449 ChEBI	alanine	+	carbon source
31932	22599 ChEBI	arabinose	+	carbon source
31932	22653 ChEBI	asparagine	+	carbon source
31932	16947 ChEBI	citrate	+	carbon source
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
31932	24148 ChEBI	galactonate	+	carbon source
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
31932	24265 ChEBI	gluconate	+	carbon source
31932	17234 ChEBI	glucose	+	carbon source
31932	17754 ChEBI	glycerol	+	carbon source
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
31932	17716 ChEBI	lactose	+	carbon source
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
31932	17306 ChEBI	maltose	+	carbon source
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
31932	29864 ChEBI	mannitol	+	carbon source
31932	37684 ChEBI	mannose	+	carbon source
31932	28053 ChEBI	melibiose	+	carbon source
31932	51850 ChEBI	methyl pyruvate	+	carbon source
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
31932	28044 ChEBI	phenylalanine	+	carbon source
31932	26271 ChEBI	proline	+	carbon source
31932	17272 ChEBI	propionate	+	carbon source
31932	15361 ChEBI	pyruvate	+	carbon source
31932	26490 ChEBI	quinate	+	carbon source
31932	16634 ChEBI	raffinose	+	carbon source
31932	26546 ChEBI	rhamnose	+	carbon source
31932	33942 ChEBI	ribose	+	carbon source
31932	17814 ChEBI	salicin	+	carbon source
31932	17822 ChEBI	serine	+	carbon source
31932	30911 ChEBI	sorbitol	+	carbon source
31932	30031 ChEBI	succinate	+	carbon source
31932	17992 ChEBI	sucrose	+	carbon source
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
31932	27082 ChEBI	trehalose	+	carbon source
31932	53423 ChEBI	tween 40	+	carbon source
31932	53426 ChEBI	tween 80	+	carbon source
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne
31932	16704 ChEBI	uridine	+	carbon source
31932	17151 ChEBI	xylitol	+	carbon source
31932	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68379	beta-glucuronidase	+	3.2.1.31	from API Coryne
31932	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
31932	urease	+	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
18407	+	+	-	-	+	-	-	-	-	+	-	not determinedn.d.	+	-	-	-	+	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18407	not determinedn.d.	-	-	-	-	+	-	-	+	-	-	+	-	-	+	-	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Wastewater

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
6916	aerobic granules, bioremidation of phenolic wastewater	Singapore	SGP	Asia
67770	Aerobic granules, bioremidation of phenolic wastewater	Singapore	SGP	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY566575 (>99% sequence identity) for Granulicoccus from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples	4
Plant Samples
Total Samples	5

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18407	1	German classification According to TRBA 466
6916	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM155233v1 assembly for Granulicoccus phenolivorans DSM 17626 = NBRC 107789 = JCM 15570	contig	GCA_001552335	1220580.4	2731957581	1121933	68.05
67770	ASM42308v1 assembly for Granulicoccus phenolivorans DSM 17626 = NBRC 107789 = JCM 15570	scaffold	GCA_000423085	1121933.4	2522572156	1121933	60.25
66792	ASM131346v1 assembly for Granulicoccus phenolivorans DSM 17626 = NBRC 107789 = JCM 15570	contig	GCA_001313465	1303682.4	2734481947	1121933

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6916	Granulicoccus phenolivorans 16S ribosomal RNA gene, partial sequence	AY566575	1315		1121933

GC content

@ref	GC-content (mol%)	Method
6916	69
67770	69	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Granulicoccus phenolivorans DSM 17626 = NBRC 107789 = JCM 15570
NCBI: GCA_000423085

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	82.80	no
125439	gram_stain	BacteriaNetⓘ	positive	93.60	no
125439	motility	BacteriaNetⓘ	no	74.20	no
125439	spore_formation	BacteriaNetⓘ	yes	53.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Granulicoccus phenolivorans DSM 17626
PATRIC: 1121933.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.79	no
125438	anaerobic	anaerobicⓘ	no	92.66	yes
125438	spore-forming	spore-formingⓘ	no	69.03	yes
125438	aerobic	aerobicⓘ	yes	84.10	no
125438	thermophilic	thermophileⓘ	no	92.00	yes
125438	flagellated	motile2+ⓘ	no	92.60	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Two Cases of Urinary Tract Infection Caused by Propionimicrobium lymphophilum.	Williams GD.	J Clin Microbiol	10.1128/jcm.00438-15	2015
Enzymology	Biocontrol of Rhizoctonia solani damping-off and promotion of tomato plant growth by endophytic actinomycetes isolated from native plants of Algerian Sahara.	Goudjal Y, Toumatia O, Yekkour A, Sabaou N, Mathieu F, Zitouni A.	Microbiol Res	10.1016/j.micres.2013.06.014	2014
	Convergence Analysis of Rust Fungi and Anther Smuts Reveals Their Common Molecular Adaptation to a Phytoparasitic Lifestyle.	Zhou X, Yu D, Cao Z.	Front Genet	10.3389/fgene.2022.863617	2022
Genetics	Unexpected genomic, biosynthetic and species diversity of Streptomyces bacteria from bats in Arizona and New Mexico, USA.	Park CJ, Caimi NA, Buecher DC, Valdez EW, Northup DE, Andam CP.	BMC Genomics	10.1186/s12864-021-07546-w	2021
	Starships are active eukaryotic transposable elements mobilized by a new family of tyrosine recombinases.	Urquhart AS, Vogan AA, Gardiner DM, Idnurm A.	Proc Natl Acad Sci U S A	10.1073/pnas.2214521120	2023
	Streptomyces sp. AC04842: Genomic Insights and Functional Expression of Its Latex Clearing Protein Genes (lcp1 and lcp2) When Cultivated With Natural and Vulcanized Rubber as the Sole Carbon Source.	Basik AA, Trakunjae C, Yeo TC, Sudesh K.	Front Microbiol	10.3389/fmicb.2022.854427	2022
Genetics	Investigation of the thermophilic mechanism in the genus Porphyrobacter by comparative genomic analysis.	Xu L, Wu YH, Zhou P, Cheng H, Liu Q, Xu XW.	BMC Genomics	10.1186/s12864-018-4789-4	2018
Genetics	Characterization and Demonstration of Mock Communities as Control Reagents for Accurate Human Microbiome Community Measurements.	Tourlousse DM, Narita K, Miura T, Ohashi A, Matsuda M, Ohyama Y, Shimamura M, Furukawa M, Kasahara K, Kameyama K, Saito S, Goto M, Shimizu R, Mishima R, Nakayama J, Hosomi K, Kunisawa J, Terauchi J, Sekiguchi Y, Kawasaki H.	Microbiol Spectr	10.1128/spectrum.01915-21	2022
Metabolism	Bacterial nanocellulose from agro-industrial wastes: low-cost and enhanced production by Komagataeibacter saccharivorans MD1.	Abol-Fotouh D, Hassan MA, Shokry H, Roig A, Azab MS, Kashyout AEB.	Sci Rep	10.1038/s41598-020-60315-9	2020
	Modeling improved production of the chemotherapeutic polypeptide actinomycin D by a novel Streptomyces sp. strain from a Saharan soil.	Djinni I, Defant A, Djoudi W, Chaabane Chaouch F, Souagui S, Kecha M, Mancini I.	Heliyon	10.1016/j.heliyon.2019.e01695	2019
Genetics	Genome sequencing and comparison of five Tilletia species to identify candidate genes for the detection of regulated species infecting wheat.	Nguyen HDT, Sultana T, Kesanakurti P, Hambleton S.	IMA Fungus	10.1186/s43008-019-0011-9	2019
	Unveiling Concealed Functions of Endosymbiotic Bacteria Harbored in the Ascomycete Stachylidium bicolor.	Almeida C, Silva Pereira C, Gonzalez-Menendez V, Bills G, Pascual J, Sanchez-Hidalgo M, Kehraus S, Genilloud O.	Appl Environ Microbiol	10.1128/aem.00660-18	2018
	Arthrobacter pokkalii sp nov, a Novel Plant Associated Actinobacterium with Plant Beneficial Properties, Isolated from Saline Tolerant Pokkali Rice, Kerala, India.	Krishnan R, Menon RR, Tanaka N, Busse HJ, Krishnamurthi S, Rameshkumar N.	PLoS One	10.1371/journal.pone.0150322	2016
Genetics	Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum.	Shen XX, Opulente DA, Kominek J, Zhou X, Steenwyk JL, Buh KV, Haase MAB, Wisecaver JH, Wang M, Doering DT, Boudouris JT, Schneider RM, Langdon QK, Ohkuma M, Endoh R, Takashima M, Manabe RI, Cadez N, Libkind D, Rosa CA, DeVirgilio J, Hulfachor AB, Groenewald M, Kurtzman CP, Hittinger CT, Rokas A.	Cell	10.1016/j.cell.2018.10.023	2018
Phylogeny	Ammonicoccus fulvus gen. nov., sp. nov., a novel member of the family Propionibacteriaceae, isolated from pig manure.	Yu Z, Wei C, Yang W, An M, Gong T.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006756	2025
	Protaetiibacter mangrovi sp. nov., isolated from mangrove soil.	Li F, Hao X, Lu Q, Tuo L, Liu S, Zheng H, Sibero MT, Shen C, Sun C.	J Antibiot (Tokyo)	10.1038/s41429-023-00627-w	2023
Phylogeny	Flavivirga rizhaonensis sp. nov., a marine bacterium isolated from intertidal sand.	Liu A, Liu HM, Du F, Wang S, Zhao LY, Zhang HH, Li YQ, Xue QJ, Li XZ.	Antonie Van Leeuwenhoek	10.1007/s10482-019-01291-7	2019
Phylogeny	Flavobacterium artemisiae sp. nov., isolated from the rhizosphere of Artemisia annua L. and emended descriptions of Flavobacterium compostarboris and Flavobacterium procerum.	Zhao JC, Cheng J, Zhang Q, Gao ZW, Zhang MY, Zhang YX.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002701	2018
Phylogeny	Granulicoccus phenolivorans gen. nov., sp. nov., a Gram-positive, phenol-degrading coccus isolated from phenol-degrading aerobic granules.	Maszenan AM, Jiang HL, Tay JH, Schumann P, Kroppenstedt RM, Tay ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64671-0	2007

References

#6916	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17626
#18407	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28189	IJSEM 730 2007 ( DOI 10.1099/ijs.0.64671-0 , PubMed 17392196 )
#31932	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28189
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Granulicoccus phenolivorans (DSM 17626, ATCC BAA-1292, CIP 109593)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001552335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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