Name: Luteococcus japonicus DSM 10546
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12621

Type strain:

Species: Luteococcus japonicus

Culture col. no.: DSM 10546, ATCC 51526, CIP 104067, IFO 12422, JCM 9415, NBRC 12422, OUT 8086, CCUG 38731, IMSNU 21283, KCTC 9794, NCIMB 13388, NRIC 1092, VKM Ac-1951

Strain history: CIP <- 1994, IFO <- M. Oda, Japan: strain OUT 8086

NCBI tax ID(s): 33984 (species)

SI-ID 43033

ATCC 51526, IFO 12422, CCUG 38731, CIP 104067, DSM 10546, JCM 9415, NCIMB 13388, VKM Ac-1951, KCTC 9794, NBRC 12422

Other strains from Luteococcus japonicus

L. japonicus CCUG 38729, DSM 10547, ATCC 51527, ...

Section

Luteococcus japonicus DSM 10546 is an aerobe, mesophilic bacterium that was isolated from soil.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Propionibacteriaceae*
	Genus	*Luteococcus*
	Species	**Luteococcus japonicus**
	Full Scientific Name (LPSN)	Luteococcus japonicus Tamura et al. 1994

Information on morphological and physiological properties Morphology

[Ref.: #120321]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #120321]	Cell shape	coccus-shaped

[Ref.: #120321]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.142

[Ref.: #18430]	Colony color	Pastel orange (2003)
[Ref.: #18430]	Incubation period	10-14 days
[Ref.: #18430]	Cultivation medium used	5006

[Ref.: #18430]	Colony color	Beige (1001)
[Ref.: #18430]	Incubation period	10-14 days
[Ref.: #18430]	Cultivation medium used	5425

[Ref.: #18430]	Colony color	Pastel orange (2003)
[Ref.: #18430]	Incubation period	10-14 days
[Ref.: #18430]	Cultivation medium used	5428

[Ref.: #18430]	Colony color	Pastel orange (2003)
[Ref.: #18430]	Incubation period	10-14 days
[Ref.: #18430]	Cultivation medium used	5530

[Ref.: #18430]	Colony color	Transparent
[Ref.: #18430]	Incubation period	10-14 days
[Ref.: #18430]	Cultivation medium used	ISP 2

[Ref.: #18430]	Multicellular complex forming ability	no
[Ref.: #18430]	Medium Name (multicellularity)	ISP 2

[Ref.: #18430]	Multicellular complex forming ability	no
[Ref.: #18430]	Medium Name (multicellularity)	5006

[Ref.: #18430]	Multicellular complex forming ability	no
[Ref.: #18430]	Medium Name (multicellularity)	5425

[Ref.: #18430]	Multicellular complex forming ability	no
[Ref.: #18430]	Medium Name (multicellularity)	5530

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3920]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #3920]

Culture medium growth

[Ref.: #3920]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3920]

Culture medium composition

expand / minimize

[Ref.: #18430]

Culture medium

ISP 2

[Ref.: #18430]

Culture medium growth

[Ref.: #18430]

Culture medium composition

expand / minimize

[Ref.: #18430]

Culture medium

5006

[Ref.: #18430]

Culture medium growth

[Ref.: #18430]

Culture medium composition

expand / minimize

[Ref.: #18430]

Culture medium

5425

[Ref.: #18430]

Culture medium growth

[Ref.: #18430]

Culture medium composition

expand / minimize

[Ref.: #18430]

Culture medium

5428

[Ref.: #18430]

Culture medium growth

[Ref.: #18430]

Culture medium

5530

[Ref.: #18430]

Culture medium growth

[Ref.: #36877]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #36877]

Culture medium growth

[Ref.: #36877]

Culture medium composition

expand / minimize

[Ref.: #120321]

Culture medium

CIP Medium 3

[Ref.: #120321]

Culture medium growth

[Ref.: #120321]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3920]		growth	28 °C
[Ref.: #18430]		optimum	28 °C
[Ref.: #36877]		growth	30 °C
[Ref.: #54422]		growth	30-37 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #120321]		growth	15-30 °C
[Ref.: #120321]	no	growth	10 °C
[Ref.: #120321]	no	growth	45 °C

[Ref.: #3920]	Temperature range	mesophilic
[Ref.: #18430]	Temperature range	mesophilic
[Ref.: #36877]	Temperature range	mesophilic
[Ref.: #54422]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #120321]	Temperature range	psychrophilic
[Ref.: #120321]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #54422]	Oxygen tolerance	aerobe
[Ref.: #120321]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %92
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.97

[Ref.: #3920]	Murein short key	A41.01
[Ref.: #3920]	Murein types	A3gamma LL-Dpm-Gly

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-mannitol ChEBI	+	fermentation	* from API Coryne
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	D-sorbitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	erythritol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E, API Coryne
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	inulin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68371]	melezitose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #120321]	nitrate ChEBI	-	reduction
[Ref.: #120321]	nitrate ChEBI	+	respiration
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #120321]	nitrite ChEBI	-	reduction
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #120321]	tributyrin ChEBI	-	hydrolysis
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #120321]	indole ChEBI	no
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #120321]	acetoin ChEBI	-
[Ref.: #68368]	acetoin ChEBI	-		* from API 20E
[Ref.: #68368]	indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120321]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #120321]	beta-galactosidase	+	3.2.1.23
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API 20E, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #120321]	caseinase	-	3.4.21.50
[Ref.: #120321]	catalase	+	1.11.1.6
[Ref.: #120321]	coagulase	-
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #120321]	DNase	-
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120321]	gelatinase	-
[Ref.: #68379]	gelatinase	-		* from API Coryne, API 20E
[Ref.: #120321]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120321]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120321]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #120321]	oxidase	+
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #120321]	urease	-	3.5.1.5
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #54422]

Fatty acid	Percentage	ECL
C17:1 ω6c	22.8	16.862
C17:1 ω8c	20.3	16.792
C15:1 ω6c	14.7	14.856
C16:1 ω7c	12	15.819
C15:0	8.4	15
C16:0	5.3	16
C15:1 ω8c	4.9	14.792
C17:0	3.8	17
C18:2 ω6,9c/C18:0 ANTE	2.3	17.724
C18:1 ω9c	2	17.769
C16:1 ω5c	0.9	15.908
C18:0	0.9	18
C16:1 ω9c	0.8	15.774
C14:0	0.8	14

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18430]	26	+	+	+	+	+	-	+	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #120321]	9483	not determinedn.d.	+	+	-	+	+	-	-	+	-	+	+	+	+	-	-	-	+	+	+	-	-	+	-	+	+	-	-	+	-	-	+	+	+	+	+	+	+	-	+	+	-	-	-	-	+	+	+	-	-

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18430]	111	+	-	+	+	-	+	+	+	+	+/-	-	not determinedn.d.	+	-	-	+	+	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18430]	143	not determinedn.d.	+	-	+	-	+	-	-	+	+	+	-	+	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3920]	Sample type/isolated from	soil
[Ref.: #3920]	Geographic location (country and/or sea, region)	Japan, Tokara islands
[Ref.: #3920]	Country	Japan
[Ref.: #3920]	Country ISO 3 Code	JPN
[Ref.: #3920]	Continent	Asia

[Ref.: #54422]	Sample type/isolated from	Soil
[Ref.: #54422]	Geographic location (country and/or sea, region)	Tokara islands
[Ref.: #54422]	Country	Japan
[Ref.: #54422]	Country ISO 3 Code	JPN
[Ref.: #54422]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tokara Islands
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #120321]	Sample type/isolated from	Environment, Soil
[Ref.: #120321]	Geographic location (country and/or sea, region)	Tokara Islands
[Ref.: #120321]	Country	Japan
[Ref.: #120321]	Country ISO 3 Code	JPN
[Ref.: #120321]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Z78208 (>99% sequence identity) for Luteococcus japonicus subclade from Microbeatlas

Aquatic Samples	1712
Soil Samples	283
Animal Samples	1192
Plant Samples	83
Total Samples	3270

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18430]	Biosafety level	1	German classification
[Ref.: #3920]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120321]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Luteococcus japonicus gene for 16S ribosomal RNA, partial sequence	D85487	1471	ENA	33984 tax ID	*
[Ref.: #20218]	L.japonicus 16S rRNA gene	Z78208	1466	ENA	33984 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Luteococcus japonicus DSM 10546	GCA_003752415	contig	GenBank	33984 tax ID
[Ref.: #66792]	Luteococcus japonicus strain DSM 10546	33984.3	wgs	PATRIC	33984 tax ID	*
[Ref.: #66792]	Luteococcus japonicus DSM 10546	2781126037	draft	JGI IMG/M	33984 tax ID	*

[Ref.: #3920]

GC-content

67 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Luteococcus japonicus strain DSM 10546 PATRIC: 33984.3
[Ref.: #69481]	spore-forming	no	92	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Luteococcus japonicus strain DSM 10546 PATRIC: 33984.3
[Ref.: #69480]	gram-positive	yes	90.411	no
[Ref.: #69480]	anaerobic	no	93.821	no
[Ref.: #69480]	halophile	no	85.428	no
[Ref.: #69480]	spore-forming	no	93.786	no
[Ref.: #69480]	glucose-util	yes	89.427	no
[Ref.: #69480]	motile	no	91.676	no
[Ref.: #69480]	flagellated	no	97.423	no
[Ref.: #69480]	thermophile	no	96.028	yes
[Ref.: #69480]	aerobic	yes	63.694	yes
[Ref.: #69480]	glucose-ferment	yes	56.354	no

Availability in culture collections External links

[Ref.: #3920]

Culture collection no.

DSM 10546, ATCC 51526, CIP 104067, IFO 12422, JCM 9415, NBRC 12422, OUT 8086, CCUG 38731, IMSNU 21283, KCTC 9794, NCIMB 13388, NRIC 1092, VKM Ac-1951

[Ref.: #81835]

SI-ID 43033

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	[Reactivating factor of Luteococcus japonicus subsp. casei: isolation and characterization].	Vorob'eva LI, Rogozhin EA, Khodzhaev EIu, Nikolaev IV, Turova TP	Prikl Biokhim Mikrobiol	10.7868/s0555109914060166	2015	*
Phylogeny	Luteococcus sediminum sp. nov., isolated from deep subseafloor sediment of the South Pacific Gyre.	Fan X, Zhang Z, Li Z, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.058529-0	2014	*
Phylogeny	Luteococcus japonicus gen. nov., sp. nov., a new gram-positive coccus with LL-diaminopimelic acid in the cell wall.	Tamura T, Takeuchi M, Yokota A	Int J Syst Bacteriol	10.1099/00207713-44-2-348	1994	*

References

#3920

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10546

#18430

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36877 ; Curators of the CIP;
#54422 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 38731

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68371

Automatically annotated from API 50CH acid .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81835

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43033.1 )

#120321 Collection of Institut Pasteur ; Curators of the CIP; CIP 104067
* These data were automatically processed and therefore are not curated

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Luteococcus japonicus strain DSM 10546

Luteococcus japonicus strain DSM 10546

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