Name: Krasilnikoviella flava DSM 21481
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12605

Type strain:

Species: Krasilnikoviella flava

Culture col. no.: DSM 21481, CCTCC AA 208024, JCM 16551, CC 0387

Strain history: DSM 21481 <-- C.-L. Jiang CC 0387 <-- Y. Jiang.

NCBI tax ID(s): 526729 (species)

SI-ID 401283

DSM 21481

Section

Krasilnikoviella flava DSM 21481 is a facultative anaerobe, mesophilic, Gram-positive bacterium that builds substrate mycelia and was isolated from sediment.

Gram-positive
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Promicromonosporaceae*
	Genus	*Krasilnikoviella*
	Species	**Krasilnikoviella flava**
	Full Scientific Name (LPSN)	Krasilnikoviella flava (Jiang et al. 2009) Nishijima et al. 2017

Synonym

Promicromonospora flava

Information on morphological and physiological properties Morphology

[Ref.: #25188]	Gram stain	positive
[Ref.: #29100]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #29100]	Cell shape	coccus-shaped

[Ref.: #29100]	Motility	no

[Ref.: #19795]	Colony color	Sulfur yellow
[Ref.: #19795]	Incubation period	10-14 days
[Ref.: #19795]	Cultivation medium used	ISP 2

[Ref.: #19795]	Colony color	Pable brown
[Ref.: #19795]	Incubation period	10-14 days
[Ref.: #19795]	Cultivation medium used	ISP 3

[Ref.: #19795]	Colony color	Beige
[Ref.: #19795]	Incubation period	10-14 days
[Ref.: #19795]	Cultivation medium used	ISP 4

[Ref.: #19795]	Colony color	Grey white
[Ref.: #19795]	Incubation period	10-14 days
[Ref.: #19795]	Cultivation medium used	ISP 5

[Ref.: #19795]	Colony color	Sulfur yellow
[Ref.: #19795]	Incubation period	10-14 days
[Ref.: #19795]	Cultivation medium used	ISP 6

[Ref.: #19795]	Colony color	Grey white
[Ref.: #19795]	Incubation period	10-14 days
[Ref.: #19795]	Cultivation medium used	ISP 7

[Ref.: #19795]	Multicellular complex forming ability	no
[Ref.: #19795]	Medium Name (multicellularity)	ISP 2

[Ref.: #19795]	Multicellular complex forming ability	no
[Ref.: #19795]	Medium Name (multicellularity)	ISP 3

[Ref.: #19795]	Multicellular complex forming ability	no
[Ref.: #19795]	Medium Name (multicellularity)	ISP 4

[Ref.: #19795]	Multicellular complex forming ability	no
[Ref.: #19795]	Medium Name (multicellularity)	ISP 5

[Ref.: #19795]	Multicellular complex forming ability	no
[Ref.: #19795]	Medium Name (multicellularity)	ISP 6

[Ref.: #19795]	Multicellular complex forming ability	no
[Ref.: #19795]	Medium Name (multicellularity)	ISP 7

[Ref.: #25188]	Multicellular complex forming ability	yes
[Ref.: #25188]	Multicellular complex name	substrate mycelia
[Ref.: #25188]	Multicellular complex further description	non-motile, coccoid, V-shaped, Y-shaped and rod-like elements

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15732]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #15732]

Culture medium growth

[Ref.: #15732]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15732]

Culture medium composition

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[Ref.: #19795]

Culture medium

ISP 2

[Ref.: #19795]

Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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[Ref.: #19795]

Culture medium

ISP 7

[Ref.: #19795]

Culture medium growth

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Culture medium composition

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[Ref.: #25188]

Culture medium

ISP 2

[Ref.: #25188]

Culture medium growth

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

[Ref.: #25188]

Culture medium growth

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Culture medium

ISP 5

[Ref.: #25188]

Culture medium growth

[Ref.: #25188]

Culture medium

nutrient agar (NA)

[Ref.: #25188]

Culture medium growth

[Ref.: #15732]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #15732]

Culture medium growth

[Ref.: #15732]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15732]

Culture medium composition

expand / minimize

[Ref.: #15732]

Culture medium

ORGANIC MEDIUM 79 (DSMZ Medium 426)

[Ref.: #15732]

Culture medium growth

[Ref.: #15732]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15732]

Culture medium composition

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[Ref.: #15732]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #15732]

Culture medium growth

[Ref.: #15732]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15732]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15732]	growth	28 °C
[Ref.: #19795]	optimum	28 °C
[Ref.: #25188]	growth	10.0-40.0 °C
[Ref.: #25188]	optimum	25.0-30.0 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #15732]	Temperature range	mesophilic
[Ref.: #19795]	Temperature range	mesophilic
[Ref.: #25188]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25188]			optimum	6.0-7.5
[Ref.: #25188]			growth	5.5-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25188]	Oxygen tolerance	facultative anaerobe
[Ref.: #29100]	Oxygen tolerance	aerobe

[Ref.: #29100]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %97.046

	Salt		Salt conc.
[Ref.: #25188]	NaCl	maximum	15	%(w/v)
[Ref.: #25188]	NaCl	optimum	1	%(w/v)
[Ref.: #29100]	NaCl	growth	02-05	%
[Ref.: #29100]	NaCl	optimum	3.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25188]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #25188]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #25188]	adipate ChEBI	-	assimilation
[Ref.: #29100]	alanine ChEBI	+	carbon source
[Ref.: #25188]	amygdalin ChEBI	+	builds acid from
[Ref.: #25188]	arabinose ChEBI	+	assimilation
[Ref.: #25188]	arbutin ChEBI	+	builds acid from
[Ref.: #25188]	casein	+	hydrolysis
[Ref.: #25188]	cellobiose ChEBI	+	builds acid from
[Ref.: #25188]	D-arabinose ChEBI	-	builds acid from
[Ref.: #25188]	D-arabitol ChEBI	+	builds acid from
[Ref.: #25188]	D-fructose ChEBI	+	builds acid from
[Ref.: #25188]	D-fucose ChEBI	-	builds acid from
[Ref.: #25188]	D-galactose ChEBI	+	builds acid from
[Ref.: #25188]	D-glucose ChEBI	+	builds acid from
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #25188]	D-lyxose ChEBI	-	builds acid from
[Ref.: #25188]	D-mannitol ChEBI	-	builds acid from
[Ref.: #25188]	D-mannose ChEBI	+	builds acid from
[Ref.: #25188]	D-ribose ChEBI	-	builds acid from
[Ref.: #25188]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #25188]	D-tagatose ChEBI	-	builds acid from
[Ref.: #25188]	D-xylose ChEBI	+	builds acid from
[Ref.: #68379]	D-xylose ChEBI	+	fermentation	* from API Coryne
[Ref.: #25188]	decanoate ChEBI	-	assimilation
[Ref.: #25188]	dna ChEBI	+	hydrolysis
[Ref.: #25188]	erythritol ChEBI	-	builds acid from
[Ref.: #25188]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #25188]	galactitol ChEBI	-	builds acid from
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #25188]	gentiobiose ChEBI	-	builds acid from
[Ref.: #25188]	gluconate ChEBI	-	builds acid from
[Ref.: #25188]	glucose ChEBI	+	fermentation
[Ref.: #25188]	glucose ChEBI	+	builds acid from
[Ref.: #25188]	glucose ChEBI	+	assimilation
[Ref.: #29100]	glucose ChEBI	+	carbon source
[Ref.: #25188]	glycerol ChEBI	+	builds acid from
[Ref.: #25188]	glycogen ChEBI	+	builds acid from
[Ref.: #25188]	indole ChEBI	+	assimilation
[Ref.: #25188]	inulin ChEBI	+	builds acid from
[Ref.: #25188]	L-arabinose ChEBI	+	builds acid from
[Ref.: #25188]	L-arabitol ChEBI	-	builds acid from
[Ref.: #25188]	L-fucose ChEBI	-	builds acid from
[Ref.: #25188]	L-sorbose ChEBI	-	builds acid from
[Ref.: #25188]	L-xylose ChEBI	-	builds acid from
[Ref.: #25188]	lactose ChEBI	-	builds acid from
[Ref.: #29100]	lactose ChEBI	+	carbon source
[Ref.: #25188]	malate ChEBI	-	assimilation
[Ref.: #25188]	maltose ChEBI	+	assimilation
[Ref.: #25188]	maltose ChEBI	+	builds acid from
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #25188]	mannitol ChEBI	+	assimilation
[Ref.: #25188]	mannose ChEBI	+	assimilation
[Ref.: #25188]	melezitose ChEBI	+	builds acid from
[Ref.: #25188]	melibiose ChEBI	+	builds acid from
[Ref.: #25188]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #25188]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #25188]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #25188]	myo-inositol ChEBI	-	builds acid from
[Ref.: #29100]	myo-inositol ChEBI	+	carbon source
[Ref.: #25188]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #25188]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #25188]	nitrate ChEBI	+	reduction
[Ref.: #29100]	nitrate ChEBI	+	reduction
[Ref.: #25188]	phenylacetate ChEBI	-	assimilation
[Ref.: #25188]	potassium gluconate ChEBI	+	assimilation
[Ref.: #25188]	raffinose ChEBI	+	builds acid from
[Ref.: #25188]	ribitol ChEBI	-	builds acid from
[Ref.: #29100]	ribose ChEBI	+	carbon source
[Ref.: #25188]	salicin ChEBI	+	builds acid from
[Ref.: #25188]	sodium citrate ChEBI	-	assimilation
[Ref.: #25188]	starch ChEBI	+	hydrolysis
[Ref.: #25188]	starch ChEBI	+	builds acid from
[Ref.: #29100]	sucrose ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #25188]	trehalose ChEBI	-	builds acid from
[Ref.: #29100]	trehalose ChEBI	+	carbon source
[Ref.: #25188]	tryptophan ChEBI	-	energy source
[Ref.: #25188]	turanose ChEBI	+	builds acid from
[Ref.: #25188]	tween 80 ChEBI	+	hydrolysis
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #25188]	xylitol ChEBI	-	builds acid from
[Ref.: #29100]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25188]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #25188]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25188]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #25188]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #25188]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #25188]	alpha-fucosidase	+	3.2.1.51
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #25188]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #25188]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #25188]	alpha-mannosidase	+	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #25188]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25188]	beta-galactosidase	+	3.2.1.23
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #25188]	beta-glucosidase	+	3.2.1.21
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #25188]	beta-glucuronidase	+	3.2.1.31
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #25188]	cystine arylamidase	+	3.4.11.3
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #25188]	cytochrome oxidase	-	1.9.3.1
[Ref.: #25188]	esterase (C 4)	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #25188]	esterase Lipase (C 8)	+
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #25188]	lecithinase	-
[Ref.: #25188]	leucine arylamidase	+	3.4.11.1
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #25188]	lipase (C 14)	+
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #25188]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #25188]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #25188]	pyrazinamidase	-	3.5.1.B15
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #25188]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #25188]	trypsin	-	3.4.21.4
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #25188]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25188]	urease	-	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #25188]	valine arylamidase	+
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25188]

Fatty acid	Percentage
C15:0 anteiso	58.5
C15:0 iso	21.5
C17:0 anteiso	8.4
C16:0 iso	5.8
C16:0	2.8
C14:0	1.2
C17:0 iso	0.8
C14:0 iso	0.7
C17:0	0.2
C18:0	0.1

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19795]	330	+/-	-	-	+	-	+	+	+	+	-	-	not determinedn.d.	+	+/-	+	+/-	+	+/-	+	+/-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19795]	619	not determinedn.d.	+	+	+	+	+	+	+	-	-	+	+	-	+	-	+	+	+	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	3-chlorocatechol degradation	100	5 of 5
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	glycogen biosynthesis	100	4 of 4
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	flavin biosynthesis	93.33	14 of 15
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	degradation of sugar acids	88	22 of 25
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	purine metabolism	84.04	79 of 94
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	methylglyoxal degradation	80	4 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	pyrimidine metabolism	77.78	35 of 45
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	urea cycle	76.92	10 of 13
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	degradation of hexoses	72.22	13 of 18
[Ref.: #66794]	aclacinomycin biosynthesis	71.43	5 of 7
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	phenol degradation	70	14 of 20
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	degradation of pentoses	67.86	19 of 28
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
[Ref.: #66794]	allantoin degradation	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	sulfoquinovose degradation	66.67	2 of 3
[Ref.: #66794]	tryptophan metabolism	65.79	25 of 38
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	glutathione metabolism	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	oxidative phosphorylation	62.64	57 of 91
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	lysine metabolism	61.9	26 of 42
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	60	6 of 10
[Ref.: #66794]	carotenoid biosynthesis	59.09	13 of 22
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	4-hydroxymandelate degradation	55.56	5 of 9
[Ref.: #66794]	methionine metabolism	53.85	14 of 26
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	myo-inositol biosynthesis	50	5 of 10
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	sphingosine metabolism	50	3 of 6
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	catecholamine biosynthesis	50	2 of 4
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	3-phenylpropionate degradation	46.67	7 of 15
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	polyamine pathway	30.43	7 of 23
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15732]	Sample type/isolated from	sediment
[Ref.: #15732]	Geographic location (country and/or sea, region)	Kiel Bay, Baltic Sea
[Ref.: #15732]	Country	Germany
[Ref.: #15732]	Country ISO 3 Code	DEU
[Ref.: #15732]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Sediment from the Baltic Sea
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM992980 (>99% sequence identity) for Krasilnikoviella from Microbeatlas

Aquatic Samples	11
Soil Samples	61
Animal Samples	20
Plant Samples	47
Total Samples	139

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15732]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15732]	Promicromonospora flava partial 16S rRNA gene, type strain CC 0387T	AM992980	1612	ENA	526729 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Krasilnikoviella flava DSM 21481	GCA_900167525	scaffold	GenBank	526729 tax ID
[Ref.: #66792]	Krasilnikoviella flava strain DSM 21481	526729.3	wgs	PATRIC	526729 tax ID	*
[Ref.: #66792]	Krasilnikoviella flava DSM 21481	2596583702	draft	JGI IMG/M	526729 tax ID	*

[Ref.: #15732]	GC-content	71.87 mol%	high performance liquid chromatography (HPLC)
[Ref.: #25188]	GC-content	74.6 mol%	genome sequence analysis
[Ref.: #29100]	GC-content	71.87 mol%
[Ref.: #15732]	GC-content	74.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Krasilnikoviella flava DSM 21481 NCBI: GCA_900167525.1
[Ref.: #69481]	spore-forming	no	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Krasilnikoviella flava strain DSM 21481 PATRIC: 526729.3
[Ref.: #69480]	gram-positive	yes	92.386	yes
[Ref.: #69480]	anaerobic	no	99.299	yes
[Ref.: #69480]	halophile	no	86.905	no
[Ref.: #69480]	spore-forming	no	86.248	yes
[Ref.: #69480]	glucose-util	yes	90.637	yes
[Ref.: #69480]	thermophile	no	98.501	yes
[Ref.: #69480]	motile	no	92.876	no
[Ref.: #69480]	aerobic	yes	94.264	no
[Ref.: #69480]	flagellated	no	98.442	no
[Ref.: #69480]	glucose-ferment	no	76.102	yes

Availability in culture collections External links

[Ref.: #15732]

Culture collection no.

DSM 21481, CCTCC AA 208024, JCM 16551, CC 0387

[Ref.: #81819]

SI-ID 401283

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Promicromonospora umidemergens sp. nov., isolated from moisture from indoor wall material.	Martin K, Schafer J, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.014142-0	2009	*
Phylogeny	Promicromonospora flava sp. nov., isolated from sediment of the Baltic Sea.	Jiang Y, Wiese J, Cao YR, Xu LH, Imhoff JF, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.006197-0	2009	*

References

#15732

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21481

#19795

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25188

M. T. Nishijima, N.,Handa, Y.,Umekawa, N.,Kigawa, R.,Sano, C.,Sugiyama, J.: Krasilnikoviella muralis gen. nov., sp. nov., a member of the family Promicromonosporaceae, isolated from the Takamatsuzuka Tumulus stone chamber interior and reclassification of Promicromonospora flava as Krasilnikoviella flava comb. nov. IJSEM 67: 294 - 300 2017 ( DOI 10.1099/ijsem.0.001618 , PubMed 27902237 )

#29100

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25529 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81819

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401283.1 )

#25529

IJSEM 1599 2009 ( DOI 10.1099/ijs.0.006197-0 , PubMed 19542138 )

* These data were automatically processed and therefore are not curated

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Krasilnikoviella flava DSM 21481

Krasilnikoviella flava strain DSM 21481

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