Name: Prevotella histicola T05-04
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12560

Type strain:

Species: Prevotella histicola

Strain Designation: T05-04

Culture col. no.: DSM 19854, CCUG 55407, JCM 15637

Strain history: CCUG 55407 <-- J. Downes T05-04 <-- S. J. Hooper.

NCBI tax ID(s): 1236504 (strain), 470565 (species)

SI-ID 396876

DSM 19854, CCUG 55407

Other strains from Prevotella histicola

P. histicola strain 8400706, DSM 21553
P. histicola CD3:32, DSM 26979, CCUG 60372

Section

Prevotella histicola T05-04 is an anaerobe, mesophilic, Gram-negative human pathogen that was isolated from human oral squamous cell carcinoma tissue.

Gram-negative
rod-shaped
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Prevotella*
	Species	**Prevotella histicola**
	Full Scientific Name (LPSN)	Prevotella histicola Downes et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32539]	Gram stain	negative

[Ref.: #32539]	Cell length	0.8-3 µm

[Ref.: #32539]	Cell width	0.7 µm

[Ref.: #32539]	Cell shape	rod-shaped

[Ref.: #32539]	Motility	no

[Ref.: #8356]	Incubation period	2-3 days

[Ref.: #60573]	Incubation period	2 days

[Ref.: #32539]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8356]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8356]

Culture medium growth

[Ref.: #8356]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8356]

Culture medium composition

expand / minimize

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Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #8356]

Culture medium growth

[Ref.: #8356]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8356]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8356]	growth	37 °C
[Ref.: #32539]	growth	37 °C
[Ref.: #32539]	optimum	37 °C
[Ref.: #60573]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #8356]	Temperature range	mesophilic
[Ref.: #32539]	Temperature range	mesophilic
[Ref.: #60573]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32539]			optimum	7
[Ref.: #32539]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8356]	Oxygen tolerance	anaerobe
[Ref.: #32539]	Oxygen tolerance	anaerobe
[Ref.: #60573]	Oxygen tolerance	anaerobe

[Ref.: #32539]

Ability of spore formation

[Ref.: #32539]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32539]	arabinose ChEBI	+	carbon source
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #32539]	cellobiose ChEBI	+	carbon source
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #32539]	lactose ChEBI	+	carbon source
[Ref.: #32539]	mannose ChEBI	+	carbon source
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #32539]	raffinose ChEBI	+	carbon source
[Ref.: #32539]	salicin ChEBI	+	carbon source
[Ref.: #32539]	sucrose ChEBI	+	carbon source
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	+	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	+		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #8356]	12908	-	-	+/-	+	+	+	-	-	-	+	-	-	-	+	-	-	+	+	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #8356]	12310	-	-	+	+	+	+	-	-	-	+	+	+	-	+	-	-	+	+	-	+	-	-	-	-	+	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8356]	Sample type/isolated from	human oral squamous cell carcinoma tissue
[Ref.: #8356]	Country	United Kingdom
[Ref.: #8356]	Country ISO 3 Code	GBR
[Ref.: #8356]	Continent	Europe

[Ref.: #60573]	Sample type/isolated from	Human oral tissue,squamous cell carcinoma
[Ref.: #60573]	Sampling date	2004
[Ref.: #60573]	Geographic location (country and/or sea, region)	Cardiff
[Ref.: #60573]	Country	United Kingdom
[Ref.: #60573]	Country ISO 3 Code	GBR
[Ref.: #60573]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human oral cavity
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	-	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB547685 (>99% sequence identity) for Prevotella histicola subclade from Microbeatlas

Aquatic Samples	1647
Soil Samples	1242
Animal Samples	80804
Plant Samples	518
Total Samples	84211

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8356]	Pathogenicity (human)	yes, in single cases
[Ref.: #8356]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prevotella histicola gene for 16S ribosomal RNA, partial sequence, strain: JCM 15637	AB547685	1480	ENA	470565 tax ID
[Ref.: #8356]	Prevotella histicola strain T05-04 16S ribosomal RNA gene, partial sequence	EU126661	1453	ENA	470565 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prevotella histicola JCM 15637 = DNF00424	GCA_000613925	contig	GenBank	1236504 tax ID
[Ref.: #66792]	Prevotella histicola JCM 15637 = DNF00424	GCA_000759075	contig	GenBank	1236504 tax ID	*
[Ref.: #66792]	Prevotella histicola JCM 15637 = DNF00424	1236504.5	wgs	PATRIC	1236504 tax ID	*

[Ref.: #8356]	GC-content	43 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32539]	GC-content	43 mol%
[Ref.: #8356]	GC-content	41.2 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella histicola JCM 15637 = DNF00424 PATRIC: 1236504.5
[Ref.: #69480]	motile	no	93.31	yes
[Ref.: #69480]	gram-positive	no	97.418	yes
[Ref.: #69480]	anaerobic	yes	97.731	no
[Ref.: #69480]	aerobic	no	98.204	yes
[Ref.: #69480]	halophile	no	84.458	no
[Ref.: #69480]	spore-forming	no	96.855	yes
[Ref.: #69480]	glucose-util	yes	89.332	no
[Ref.: #69480]	flagellated	no	96.824	yes
[Ref.: #69480]	thermophile	no	97.667	yes
[Ref.: #69480]	glucose-ferment	yes	57.179	no

Availability in culture collections External links

[Ref.: #8356]

Culture collection no.

DSM 19854, CCUG 55407, JCM 15637

[Ref.: #81774]

SI-ID 396876

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Prevotella histicola Protects From Arthritis by Expansion of Allobaculum and Augmenting Butyrate Production in Humanized Mice.	Balakrishnan B, Luckey D, Bodhke R, Chen J, Marietta E, Jeraldo P, Murray J, Taneja V	Front Immunol	10.3389/fimmu.2021.609644	2021	*
Phylogeny	Prevotella jejuni sp. nov., isolated from the small intestine of a child with coeliac disease.	Hedberg ME, Israelsson A, Moore ERB, Svensson-Stadler L, Wai SN, Pietz G, Sandstrom O, Hernell O, Hammarstrom ML, Hammarstrom S	Int J Syst Evol Microbiol	10.1099/ijs.0.052647-0	2013	*
Phylogeny	Prevotella histicola sp. nov., isolated from the human oral cavity.	Downes J, Hooper SJ, Wilson MJ, Wade WG	Int J Syst Evol Microbiol	10.1099/ijs.0.65656-0	2008	*

References

#8356

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19854

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32539

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28757 (see below)

#60573 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55407

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#81774

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396876.1 )

#28757

IJSEM 1788 2008 ( DOI 10.1099/ijs.0.65656-0 , PubMed 18676457 )

* These data were automatically processed and therefore are not curated

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Prevotella histicola JCM 15637 = DNF00424

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