Name: Heyndrickxia ginsengihumi DSM 18134
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1247

Type strain:

Species: Heyndrickxia ginsengihumi

Culture col. no.: DSM 18134, Gsoil 114, KCTC 13944

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 363870 (species)

SI-ID 397825

DSM 18134

Special Collections

DSMZ
KCTC

Section

Heyndrickxia ginsengihumi DSM 18134 is an aerobe, spore-forming, rod-shaped bacterium that was isolated from soil, ginseng field.

rod-shaped
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Heyndrickxia*
	Species	**Heyndrickxia ginsengihumi**
	Full Scientific Name (LPSN)	Heyndrickxia ginsengihumi (Ten et al. 2007) Narsing Rao et al. 2023

	Synonym	Weizmannia ginsengihumi
	Synonym	Bacillus ginsengihumi

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7402]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7402]

Culture medium growth

[Ref.: #7402]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7402]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7402]			growth	30 °C
[Ref.: #67771]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67771]	Type of spore	spore
[Ref.: #67771]	Ability of spore formation	yes

[Ref.: #67771]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7402]	Sample type/isolated from	soil, ginseng field
[Ref.: #7402]	Country	Republic of Korea
[Ref.: #7402]	Country ISO 3 Code	KOR
[Ref.: #7402]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil of the ginseng field
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB245378 (>99% sequence identity) for Weizmannia ginsengihum subclade from Microbeatlas

Aquatic Samples	1851
Soil Samples	3931
Animal Samples	3278
Plant Samples	1407
Total Samples	10467

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7402]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7402]	Bacillus ginsengihumi gene for 16S rRNA, partial sequence, strain: Gsoil 114	AB245378	1499	GenBank ENA	363870 tax ID

[Ref.: #7402]

GC-content

41.8 mol%

Availability in culture collections External links

[Ref.: #7402]

Culture collection no.

DSM 18134, Gsoil 114, KCTC 13944

[Ref.: #70903]

SI-ID 397825

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus aquiflavi sp. nov., isolated from yellow water of strongly flavored Chinese baijiu.	Xie J, Cheng K, Zhao D, Yang G, Qiao Z, Qiu S, Yu X, Liu H, Li T, Feng H, Yao S, Zhai L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004185	2020	*
Phylogeny	Bacillus camelliae sp. nov., isolated from Pu'er tea.	Niu L, Xiong M, Zhang J, Xiang Y, Song L, Hua Z, Li W	Int J Syst Evol Microbiol	10.1099/ijsem.0.002542	2018	*

References

#7402

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18134

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#70903

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397825.1 )

* These data were automatically processed and therefore are not curated

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