Strain identifier

BacDive ID: 1247

Type strain: Yes

Species: Heyndrickxia ginsengihumi

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 363870 (species)

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General

@ref: 7402

BacDive-ID: 1247

DSM-Number: 18134

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, rod-shaped

description: Heyndrickxia ginsengihumi DSM 18134 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil, ginseng field.

NCBI tax id

  • NCBI tax id: 363870
  • Matching level: species

strain history

@refhistory
7402<- Sung Taik Lee <- Wan Taek Im; Gsoil 114
67771<- ST Lee, KAIST

doi: 10.13145/bacdive1247.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Heyndrickxia
  • species: Heyndrickxia ginsengihumi
  • full scientific name: Heyndrickxia ginsengihumi (Ten et al. 2007) Narsing Rao et al. 2023

  • synonyms

    @refsynonym
    20215Weizmannia ginsengihumi
    20215Bacillus ginsengihumi

@ref: 7402

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Weizmannia

species: Weizmannia ginsengihumi

full scientific name: Weizmannia ginsengihumi (Ten et al. 2007) Gupta et al. 2020

type strain: yes

Morphology

cell morphology

@refcell shapemotilitygram stain
67771rod-shapedno
67771positive

Culture and growth conditions

culture medium

  • @ref: 7402
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7402positivegrowth30mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

  • @ref: 67771
  • type of spore: spore
  • spore formation: yes

observation

  • @ref: 67771
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7402soil, ginseng fieldRepublic of KoreaKORAsia
67771From soil of the ginseng fieldRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_4703.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1672;97_2839;98_3527;99_4703&stattab=map
  • Last taxonomy: Weizmannia ginsengihum subclade
  • 16S sequence: AB245378
  • Sequence Identity:
  • Total samples: 10467
  • soil counts: 3931
  • aquatic counts: 1851
  • animal counts: 3278
  • plant counts: 1407

Safety information

risk assessment

  • @ref: 7402
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7402
  • description: Bacillus ginsengihumi gene for 16S rRNA, partial sequence, strain: Gsoil 114
  • accession: AB245378
  • length: 1499
  • database: ena
  • NCBI tax ID: 363870

GC content

  • @ref: 7402
  • GC-content: 41.8

External links

@ref: 7402

culture collection no.: DSM 18134, Gsoil 114, KCTC 13944

straininfo link

  • @ref: 70903
  • straininfo: 397825

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29300151Bacillus camelliae sp. nov., isolated from Pu'er tea.Niu L, Xiong M, Zhang J, Xiang Y, Song L, Hua Z, Li WInt J Syst Evol Microbiol10.1099/ijsem.0.0025422018Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Food Microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tea/*microbiology, Vitamin K 2/analogs & derivatives/chemistryBiotechnology
Phylogeny32375947Bacillus aquiflavi sp. nov., isolated from yellow water of strongly flavored Chinese baijiu.Xie J, Cheng K, Zhao D, Yang G, Qiao Z, Qiu S, Yu X, Liu H, Li T, Feng H, Yao S, Zhai LInt J Syst Evol Microbiol10.1099/ijsem.0.0041852020Alcoholic Beverages/*microbiology, Bacillus/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, WaterTranscriptome

Reference

@idauthorscataloguedoi/urltitle
7402Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18134)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18134
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70903Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397825.1StrainInfo: A central database for resolving microbial strain identifiers