Strain identifier
BacDive ID: 1247
Type strain: 
Species: Heyndrickxia ginsengihumi
Strain history: <- ST Lee, KAIST
NCBI tax ID(s): 363870 (species)
version 9 (current version)
General
@ref: 7402
BacDive-ID: 1247
DSM-Number: 18134
keywords: 16S sequence, Bacteria, aerobe, spore-forming, rod-shaped
description: Heyndrickxia ginsengihumi DSM 18134 is an aerobe, spore-forming, rod-shaped bacterium that was isolated from soil, ginseng field.
NCBI tax id
- NCBI tax id: 363870
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7402 | <- Sung Taik Lee <- Wan Taek Im; Gsoil 114 |
| 67771 | <- ST Lee, KAIST |
doi: 10.13145/bacdive1247.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Heyndrickxia
- species: Heyndrickxia ginsengihumi
- full scientific name: Heyndrickxia ginsengihumi (Ten et al. 2007) Narsing Rao et al. 2023
synonyms
@ref synonym 20215 Weizmannia ginsengihumi 20215 Bacillus ginsengihumi
@ref: 7402
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Weizmannia
species: Weizmannia ginsengihumi
full scientific name: Weizmannia ginsengihumi (Ten et al. 2007) Gupta et al. 2020
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | gram stain |
|---|---|---|---|
| 67771 | rod-shaped | no | |
| 67771 | positive |
Culture and growth conditions
culture medium
- @ref: 7402
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 7402 | positive | growth | 30 |
| 67771 | positive | growth | 30 |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
- @ref: 67771
- type of spore: spore
- spore formation: yes
observation
- @ref: 67771
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 7402 | soil, ginseng field | Republic of Korea | KOR | Asia |
| 67771 | From soil of the ginseng field | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_4703.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1672;97_2839;98_3527;99_4703&stattab=map
- Last taxonomy: Weizmannia ginsengihum subclade
- 16S sequence: AB245378
- Sequence Identity:
- Total samples: 10467
- soil counts: 3931
- aquatic counts: 1851
- animal counts: 3278
- plant counts: 1407
Safety information
risk assessment
- @ref: 7402
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7402
- description: Bacillus ginsengihumi gene for 16S rRNA, partial sequence, strain: Gsoil 114
- accession: AB245378
- length: 1499
- database: nuccore
- NCBI tax ID: 363870
GC content
- @ref: 7402
- GC-content: 41.8
External links
@ref: 7402
culture collection no.: DSM 18134, Gsoil 114, KCTC 13944
straininfo link
- @ref: 70903
- straininfo: 397825
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 29300151 | Bacillus camelliae sp. nov., isolated from Pu'er tea. | Niu L, Xiong M, Zhang J, Xiang Y, Song L, Hua Z, Li W | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002542 | 2018 | Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Food Microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tea/*microbiology, Vitamin K 2/analogs & derivatives/chemistry | Biotechnology |
| Phylogeny | 32375947 | Bacillus aquiflavi sp. nov., isolated from yellow water of strongly flavored Chinese baijiu. | Xie J, Cheng K, Zhao D, Yang G, Qiao Z, Qiu S, Yu X, Liu H, Li T, Feng H, Yao S, Zhai L | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004185 | 2020 | Alcoholic Beverages/*microbiology, Bacillus/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Water | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7402 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18134) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18134 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 70903 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID397825.1 | StrainInfo: A central database for resolving microbial strain identifiers |