Halalkalibacter wakoensis (DSM 2521, ATCC 21832, FERM P-1138)

Name: Halalkalibacter wakoensis (DSM 2521, ATCC 21832, FERM P-1138)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1240

Type strain

Strain Designation N-1

Culture col. no. DSM 2521 ATCC 21832 FERM P-1138 JCM 9140 N-1 2 more

NCBI tax ID(s) 1236970 127891

Special Collections DSMZ JCM CIP Literature strains

History <- ATCC <- Rikagaku Kenkyusho, N-1 K. Horikoshi N-1. CIP <- 2005, JCM <- 1994, K. Horikoshi, Japan Ag. Marine-Earth Science Technol., Yokosuka, Japan: strain N-1

Links

Halalkalibacter wakoensis N-1 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

spore-forming Gram-positive motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 44645

ATCC 21832,DSM 2521,JCM 9140,CIP 109022

@ref 20215

Last LPSN update 2026-02-09 11:18:03

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Halalkalibacter

Species Halalkalibacter wakoensis

Full scientific name Halalkalibacter wakoensis (Nogi et al. 2005) Joshi et al. 2022

Synonyms (2)

Alkalihalobacillus wakoensis
Bacillus wakoensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31483	positive	1.75 µm	0.65 µm	rod-shaped
123903	positive			rod-shaped

Pigmentation

31483

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1109	ALKALINE NUTRIENT AGAR (DSMZ Medium 31)	Medium recipe at MediaDive	Name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31) Composition: Agar 15.0 g/l Na2CO3 anhydrous 5.3 g/l Peptone 5.0 g/l NaHCO3 4.2 g/l Meat extract 3.0 g/l Distilled water
40094	MEDIUM 291 - for Bacillus horti		Distilled water make up to (900.000 ml);Magnesium sulphate heptahydrate (0.200 g);Agar (15.000 g);Glucose (10.000 g);Yeast extract (5.000 g);Potassium di-hydrogen phosphate (1.000 g);Polypeptone (5.000 g);Sodium carbonate solution - M00442 (100.000 ml)
123903	CIP Medium 291	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1109	positive	growth	30
31483	positive	growth	10-40
31483	positive	optimum	37
40094	positive	growth	37
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
31483	positive	optimum	9.5
31483	positive	growth	08-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31483	aerobe
125439	obligate aerobe	96.5

Spore formation

31483

Spore formationyes

Compound production

1109

Compoundcellulase, alkaline

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31483	NaCl	positive	growth	0-10 %
31483	NaCl	positive	optimum	5 %

Observation

@ref	Observation
31483	aggregates in clumps
67770	quinones: MK-6, MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
31483	17057 ChEBI	cellobiose	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
31483	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
31483	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
31483	17306 ChEBI	maltose	+	carbon source
31483	29864 ChEBI	mannitol	+	carbon source
31483	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
31483	17632 ChEBI	nitrate	+	reduction
123903	17632 ChEBI	nitrate	+	reduction
123903	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
31483	17814 ChEBI	salicin	+	carbon source
31483	30911 ChEBI	sorbitol	+	carbon source
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
31483	17992 ChEBI	sucrose	+	carbon source
31483	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
31483	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123903	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123903	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31483	catalase	+	1.11.1.6
123903	catalase	+	1.11.1.6
67770	cellulase		3.2.1.4
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
123903	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
123903	ornithine decarboxylase	-	4.1.1.17
123903	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
123903	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	L-lactaldehyde degradation	100	3 of 3
66794	gluconeogenesis	100	8 of 8
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	ribulose monophosphate pathway	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	adipate degradation	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	pentose phosphate pathway	100	11 of 11
66794	palmitate biosynthesis	95.45	21 of 22
66794	Entner Doudoroff pathway	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	ketogluconate metabolism	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	citric acid cycle	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	phenol degradation	85	17 of 20
66794	leucine metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	1,4-dihydroxy-6-naphthoate biosynthesis	83.33	5 of 6
66794	alanine metabolism	82.76	24 of 29
66794	proline metabolism	81.82	9 of 11
66794	purine metabolism	80.85	76 of 94
66794	pyrimidine metabolism	80	36 of 45
66794	propionate fermentation	80	8 of 10
66794	glycine betaine biosynthesis	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glutathione metabolism	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	glycolysis	76.47	13 of 17
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	degradation of sugar alcohols	75	12 of 16
66794	isoleucine metabolism	75	6 of 8
66794	polyamine pathway	73.91	17 of 23
66794	methionine metabolism	73.08	19 of 26
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	myo-inositol biosynthesis	70	7 of 10
66794	enterobactin biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	arginine metabolism	66.67	16 of 24
66794	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
66794	acetoin degradation	66.67	2 of 3
66794	tryptophan metabolism	65.79	25 of 38
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	d-xylose degradation	63.64	7 of 11
66794	oxidative phosphorylation	62.64	57 of 91
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of pentoses	60.71	17 of 28
66794	starch degradation	60	6 of 10
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	3-phenylpropionate degradation	60	9 of 15
66794	gallate degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	histidine metabolism	58.62	17 of 29
66794	lipid metabolism	58.06	18 of 31
66794	cysteine metabolism	55.56	10 of 18
66794	nitrate assimilation	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	sulfate reduction	53.85	7 of 13
66794	urea cycle	53.85	7 of 13
66794	pantothenate biosynthesis	50	3 of 6
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	degradation of hexoses	50	9 of 18
66794	glycine metabolism	50	5 of 10
66794	CMP-KDO biosynthesis	50	2 of 4
66794	androgen and estrogen metabolism	50	8 of 16
66794	quinate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	lysine metabolism	47.62	20 of 42
66794	vitamin B12 metabolism	47.06	16 of 34
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	metabolism of disaccharids	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	ascorbate metabolism	45.45	10 of 22
66794	lipid A biosynthesis	44.44	4 of 9
66794	coenzyme M biosynthesis	40	4 of 10
66794	vitamin K metabolism	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	degradation of sugar acids	36	9 of 25
66794	tyrosine metabolism	35.71	5 of 14
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	arachidonic acid metabolism	27.78	5 of 18
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	carnitine metabolism	25	2 of 8
66794	carotenoid biosynthesis	22.73	5 of 22
66794	daunorubicin biosynthesis	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123903	-	+	+	-	-	+	-	-	-	-	+	-	-	-	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
123903	not determinedn.d.	-	-	-	+/-	-	+/-	-	-	+/-	-	+/-	+/-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	+/-	+/-	+/-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type
1109	soil
67770	Soil
123903	Environment, Soil

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1109	1	Risk group (German classification) According to TRBA 466
123903	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM51309v1 assembly for Halalkalibacter wakoensis JCM 9140	contig	GCA_000513095	1236970.3	2609459807	1236970	33.82
67770	ASM131504v1 assembly for Halalkalibacter wakoensis JCM 9140	contig	GCA_001315045	1236970.4		1236970	31.19

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Bacillus sp. N1 partial 16S rRNA gene	AJ786654	649	288813
20218	Bacillus sp. N1 16S ribosomal RNA gene, partial sequence	DQ376939	1322	288813
20218	Bacillus wakoensis 16S ribosomal RNA gene, partial sequence	FJ876429	600	127891
20218	Bacillus sp. N1(2009) 16S ribosomal RNA gene, partial sequence	GU086413	1514	690148
20218	Bacillus sp. N1(2011) 16S ribosomal RNA gene, partial sequence	HQ451884	1420	995018
20218	Bacillus sp. N1(2012) 16S ribosomal RNA gene, partial sequence	JX272922	1155	1229622
20218	Bacillus sp. N1(2013) 16S ribosomal RNA gene, partial sequence	KF051777	1449	1348145
31483	Bacillus wakoensis gene for 16S rRNA	AB043851	1524	127891

GC content

@ref	GC-content (mol%)	Method
1109	37.2
31483	38.1
67770	38.1	high performance liquid chromatography (HPLC)
67770	38.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halalkalibacter wakoensis JCM 9140
NCBI: GCA_000513095

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.50	no
125439	gram_stain	BacteriaNetⓘ	variable	70.90	no
125439	motility	BacteriaNetⓘ	yes	77.40	no
125439	spore_formation	BacteriaNetⓘ	yes	87.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus wakoensis JCM 9140
PATRIC: 1236970.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	69.55	no
125438	anaerobic	anaerobicⓘ	no	98.21	yes
125438	spore-forming	spore-formingⓘ	yes	84.93	yes
125438	aerobic	aerobicⓘ	yes	76.13	yes
125438	thermophilic	thermophileⓘ	no	91.43	yes
125438	flagellated	motile2+ⓘ	yes	86.33	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequences of Three Alkaliphilic Bacillus Strains, Bacillus wakoensis JCM 9140T, Bacillus akibai JCM 9157T, and Bacillus hemicellulosilyticus JCM 9152T.	Yuki M, Oshima K, Suda W, Oshida Y, Kitamura K, Iida T, Hattori M, Ohkuma M	Genome Announc	10.1128/genomeA.01258-13	2014
Phylogeny	Characterization of alkaliphilic Bacillus strains used in industry: proposal of five novel species.	Nogi Y, Takami H, Horikoshi K	Int J Syst Evol Microbiol	10.1099/ijs.0.63649-0	2005
	Alkalihalobacterium elongatum gen. nov. sp. nov.: An Antibiotic-Producing Bacterium Isolated From Lonar Lake and Reclassification of the Genus Alkalihalobacillus Into Seven Novel Genera.	Joshi A, Thite S, Karodi P, Joseph N, Lodha T.	Front Microbiol	10.3389/fmicb.2021.722369	2021
	Two Novel Alkaliphilic Species Isolated from Saline-Alkali Soil in China: Halalkalibacter flavus sp. nov., and Halalkalibacter lacteus sp. nov.	Jin PJ, Sun L, Liu YH, Wang KK, Narsing Rao MP, Mohamad OAA, Fang BZ, Li L, Gao L, Li WJ, Wang S.	Microorganisms	10.3390/microorganisms12050950	2024
Phylogeny	Bacillus haikouensis sp. nov., a facultatively anaerobic halotolerant bacterium isolated from a paddy soil.	Li J, Yang G, Lu Q, Zhao Y, Zhou S.	Antonie Van Leeuwenhoek	10.1007/s10482-014-0248-7	2014
Phylogeny	Bacillus huizhouensis sp. nov., isolated from a paddy field soil.	Li J, Yang G, Wu M, Zhao Y, Zhou S.	Antonie Van Leeuwenhoek	10.1007/s10482-014-0208-2	2014
Phylogeny	Bacillus tianmuensis sp. nov., isolated from soil in Tianmu Mountain national natural reserve, Hangzhou, China.	Wen YP, Wu XC, Qian CD, Zhao YH, Fang HH, Li O.	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01610.x	2009
Phylogeny	Bacillus solisalsi sp. nov., a halotolerant, alkaliphilic bacterium isolated from soil around a salt lake.	Liu H, Zhou Y, Liu R, Zhang KY, Lai R.	Int J Syst Evol Microbiol	10.1099/ijs.0.000653-0	2009
Phylogeny	Bacillus lehensis sp. nov., an alkalitolerant bacterium isolated from soil.	Ghosh A, Bhardwaj M, Satyanarayana T, Khurana M, Mayilraj S, Jain RK.	Int J Syst Evol Microbiol	10.1099/ijs.0.64617-0	2007
Phylogeny	Bacillus urbisdiaboli sp. nov., isolated from soil sampled in Xinjiang.	Liu B, Liu GH, Wang XY, Wang JP, Chen Z, Chen MC, Zhang HF, Singonca C	Int J Syst Evol Microbiol	10.1099/ijsem.0.003363	2019

References

#1109	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2521
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#27781	IJSEM 2309 2005 ( DOI 10.1099/ijs.0.63649-0 , PubMed 16280488 )
#31483	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27781
#40094	; Curators of the CIP;
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#123903	Collection of Institut Pasteur ; Curators of the CIP; CIP 109022
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Halalkalibacter wakoensis (DSM 2521, ATCC 21832, FERM P-1138)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000513095

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media