Name: Ferdinandcohnia humi R-17010
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1230

Type strain:

Species: Ferdinandcohnia humi

Strain Designation: R-17010

Culture col. no.: DSM 16318, LMG 22167

Strain history: <- J. Heyrman; R-17010 <- A. Felske

NCBI tax ID(s): 263474 (species)

SI-ID 129422

LMG 22167, DSM 16318, KACC 11370

Section

Ferdinandcohnia humi R-17010 is a spore-forming, mesophilic, motile bacterium that was isolated from soil.

motile
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Ferdinandcohnia*
	Species	**Ferdinandcohnia humi**
	Full Scientific Name (LPSN)	Ferdinandcohnia humi corrig. (Heyrman et al. 2005) Gupta et al. 2020

	Synonym	Fredinandcohnia humi
	Synonym	Bacillus humi

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %95.583

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6364]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #6364]

Culture medium growth

[Ref.: #6364]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6364]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6364]			growth	30 °C

[Ref.: #6364]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6364]	Sample type/isolated from	soil
[Ref.: #6364]	Geographic location (country and/or sea, region)	Drentse A research area
[Ref.: #6364]	Country	Netherlands
[Ref.: #6364]	Country ISO 3 Code	NLD
[Ref.: #6364]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ627210 (>99% sequence identity) for Bacillus from Microbeatlas

Aquatic Samples	33
Soil Samples	226
Animal Samples	37
Plant Samples	10
Total Samples	306

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6364]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Bacillus humi partial 16S rRNA gene, type strain LMG 22167	AJ627210	1504	ENA	263474 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Fredinandcohnia humi DSM 16318	GCA_001439915	scaffold	GenBank	263474 tax ID	*
[Ref.: #66792]	Bacillus humi strain DSM 16318	263474.3	wgs	PATRIC	263474 tax ID	*
[Ref.: #66792]	Fredinandcohnia humi DSM 16318	2916837766	draft	JGI IMG/M	263474 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fredinandcohnia humi DSM 16318 NCBI: GCA_001439915.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fredinandcohnia humi DSM 16318 NCBI: GCA_001439915.1
[Ref.: #69480]	flagellated	yes	78.662	no
[Ref.: #69480]	gram-positive	yes	86.881	no
[Ref.: #69480]	anaerobic	no	98.17	no
[Ref.: #69480]	aerobic	yes	82.604	no
[Ref.: #69480]	halophile	no	50	no
[Ref.: #69480]	spore-forming	yes	94.915	no
[Ref.: #69480]	glucose-util	yes	88.448	no
[Ref.: #69480]	motile	yes	87.563	no
[Ref.: #69480]	thermophile	no	98.536	no
[Ref.: #69480]	glucose-ferment	no	87.935	no

Availability in culture collections External links

[Ref.: #6364]

Culture collection no.

DSM 16318, LMG 22167

[Ref.: #70886]

SI-ID 129422

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus salinus sp. nov., isolated from commercial solar salt.	Kang H, Kang J, Cha I, Kim H, Joung Y, Jang TY, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004096	2020	*
Phylogeny	Bacillus aciditolerans sp. nov., isolated from paddy soil.	Ding MJ, Shang NJ, Xiao ZX, Shao F, Liu L, Huang Y, Zhou LK, Zhou JH, Zhang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003285	2019	*
Phylogeny	Bacillus salidurans sp. nov., isolated from salt-accumulated pepper rhizospheric soil.	Son JS, Hwang YJ, Lee SY, Ghim SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.003110	2018	*
Phylogeny	Bacillus onubensis sp. nov., isolated from the air of two Andalusian caves.	Dominguez-Monino I, Jurado V, Gonzalez-Pimentel JL, Miller AZ, Hermosin B, Saiz-Jimenez C	Syst Appl Microbiol	10.1016/j.syapm.2018.01.001	2018	*
Genetics	Draft Genome Sequence of Bacillus humi LMG 22167T (DSM 16318), an Endospore-Forming Bacterium Isolated from Soil.	Wang JP, Liu B, Liu GH, Pan Z, Xiao RF, Chen M, Chen DJ	Genome Announc	10.1128/genomeA.01692-15	2016	*
Phylogeny	Bacillus nitroreducens sp. nov., a humus-reducing bacterium isolated from a compost.	Guo J, Wang YQ, Yang G, Chen Y, Zhou S, Zhao Y, Zhuang L	Arch Microbiol	10.1007/s00203-016-1193-9	2016	*
Phylogeny	Thermotolerant Bacillus kokeshiiformis sp. nov. isolated from marine animal resources compost.	Poudel P, Miyamoto H, Miyamoto H, Okugawa Y, Tashiro Y, Sakai K	Int J Syst Evol Microbiol	10.1099/ijs.0.059329-0	2014	*
Phylogeny	Bacillus alkalitelluris sp. nov., an alkaliphilic bacterium isolated from sandy soil.	Lee JC, Lee GS, Park DJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65733-0	2008	*
Phylogeny	Bacillus arenosi sp. nov., Bacillus arvi sp. nov. and Bacillus humi sp. nov., isolated from soil.	Heyrman J, Rodriguez-Diaz M, Devos J, Felske A, Logan NA, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.63240-0	2005	*

References

#6364

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16318

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70886

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID129422.1 )

* These data were automatically processed and therefore are not curated

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Fredinandcohnia humi DSM 16318

Fredinandcohnia humi DSM 16318

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