Name: Pseudalkalibacillus hwajinpoensis SW-72
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1226

Type strain:

Species: Pseudalkalibacillus hwajinpoensis

Strain Designation: SW-72

Culture col. no.: DSM 16206, JCM 11807, KCCM 41641, CIP 108441, LMG 24749

Strain history: CIP <- 2004, JCM <- 2002, J.H. Yoon: strain SW-72

NCBI tax ID(s): 208199 (species)

SI-ID 132012

JCM 11807, DSM 16206, CIP 108441, LMG 24749

Section

Pseudalkalibacillus hwajinpoensis SW-72 is an aerobe, spore-forming, Gram-variable bacterium that was isolated from sea water.

Gram-variable
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Pseudalkalibacillus*
	Species	**Pseudalkalibacillus hwajinpoensis**
	Full Scientific Name (LPSN)	Pseudalkalibacillus hwajinpoensis (Yoon et al. 2004) Joshi et al. 2022

	Synonym	Alkalihalobacillus hwajinpoensis
	Synonym	Bacillus hwajinpoensis

Information on morphological and physiological properties Morphology

[Ref.: #29923]	Gram stain	variable
[Ref.: #119993]	Gram stain	positive

[Ref.: #29923]	Cell length	3.25 µm

[Ref.: #29923]	Cell width	1.15 µm

[Ref.: #29923]	Cell shape	rod-shaped
[Ref.: #119993]	Cell shape	rod-shaped

[Ref.: #29923]	Motility	no
[Ref.: #119993]	Motility	yes

[Ref.: #29923]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6325]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6325]

Culture medium growth

[Ref.: #6325]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6325]

Culture medium composition

expand / minimize

[Ref.: #40002]

Culture medium

Marine agar (MA)

[Ref.: #40002]

Culture medium growth

[Ref.: #40002]

Culture medium composition

expand / minimize

[Ref.: #119993]

Culture medium

CIP Medium 13

[Ref.: #119993]

Culture medium growth

[Ref.: #119993]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6325]		growth	30 °C
[Ref.: #29923]		growth	10-40 °C
[Ref.: #29923]		optimum	32.5 °C
[Ref.: #40002]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #119993]		growth	10-37 °C
[Ref.: #119993]	no	growth	45 °C
[Ref.: #119993]	no	growth	55 °C

		pH
[Ref.: #29923]	optimum	6.5
[Ref.: #29923]	growth	05-07
[Ref.: #119993]	growth	6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29923]

Oxygen tolerance

aerobe

[Ref.: #29923]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.166

	Salt	Tested relation		Salt conc.
[Ref.: #29923]	NaCl		growth	0.1-19	%
[Ref.: #29923]	NaCl		optimum	3.5	%
[Ref.: #119993]	NaCl		growth	2-4	%
[Ref.: #119993]	NaCl	no	growth	0	%
[Ref.: #119993]	NaCl	no	growth	6	%
[Ref.: #119993]	NaCl	no	growth	8	%
[Ref.: #119993]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29923]	cellobiose ChEBI	+	carbon source
[Ref.: #119993]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29923]	esculin ChEBI	+	hydrolysis
[Ref.: #119993]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29923]	galactose ChEBI	+	carbon source
[Ref.: #29923]	gelatin ChEBI	+	carbon source
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #119993]	hippurate ChEBI	+	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #29923]	mannitol ChEBI	+	carbon source
[Ref.: #29923]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29923]	melibiose ChEBI	+	carbon source
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #29923]	nitrate ChEBI	+	reduction
[Ref.: #119993]	nitrate ChEBI	+	reduction
[Ref.: #119993]	nitrate ChEBI	-	respiration
[Ref.: #119993]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29923]	raffinose ChEBI	+	carbon source
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29923]	ribose ChEBI	+	carbon source
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29923]	tween 20 ChEBI	+	carbon source
[Ref.: #29923]	tween 40 ChEBI	+	carbon source
[Ref.: #29923]	tween 60 ChEBI	+	carbon source
[Ref.: #29923]	tween 80 ChEBI	+	carbon source
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119993]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #119993]		acetoin ChEBI	-
[Ref.: #119993]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119993]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119993]	amylase	+
[Ref.: #119993]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29923]	catalase	+	1.11.1.6
[Ref.: #119993]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #119993]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119993]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #29923]	gelatinase	+
[Ref.: #119993]	gelatinase	+
[Ref.: #119993]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119993]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119993]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119993]	oxidase	-
[Ref.: #119993]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119993]	tween esterase	+
[Ref.: #119993]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #119993]	11304	not determinedn.d.	+/-	-	-	-	+/-	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	+	-	-	-	+/-	+/-	+	-	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+/-	-	+/-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119993]	11191	-	+	+	+	-	-	-	-	-	+	+	+	-	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6325]	Sample type/isolated from	sea water
[Ref.: #6325]	Geographic location (country and/or sea, region)	East Sea, Hwajinpo Beach
[Ref.: #6325]	Country	Republic of Korea
[Ref.: #6325]	Country ISO 3 Code	KOR
[Ref.: #6325]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seawater
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hwajinpo Beach
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #119993]	Sample type/isolated from	Environment, Sea water
[Ref.: #119993]	Geographic location (country and/or sea, region)	Hwajinpo beach
[Ref.: #119993]	Country	Republic of Korea
[Ref.: #119993]	Country ISO 3 Code	KOR
[Ref.: #119993]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF541966 (>99% sequence identity) for Alkalihalobacillus from Microbeatlas

Aquatic Samples	683
Soil Samples	316
Animal Samples	370
Plant Samples	25
Total Samples	1394

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6325]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119993]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6325]	Bacillus hwajinpoensis 16S ribosomal RNA gene, partial sequence	AF541966	1507	GenBank ENA	208199 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudalkalibacillus hwajinpoensis DSM 16206	GCA_029277305	complete	GenBank ENA	208199 tax ID	*

[Ref.: #6325]	GC-content	40.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29923]	GC-content	40.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudalkalibacillus hwajinpoensis DSM 16206 NCBI: GCA_029277305.1
[Ref.: #69480]	flagellated	no	55.208	yes
[Ref.: #69480]	gram-positive	yes	81.411	yes
[Ref.: #69480]	anaerobic	no	98.282	yes
[Ref.: #69480]	aerobic	yes	92.664	yes
[Ref.: #69480]	halophile	yes	82.563	no
[Ref.: #69480]	spore-forming	yes	92.166	yes
[Ref.: #69480]	glucose-ferment	no	93.108	no
[Ref.: #69480]	thermophile	no	97.926	no
[Ref.: #69480]	glucose-util	yes	91.486	no
[Ref.: #69480]	motile	yes	79.818	no

Availability in culture collections External links

[Ref.: #6325]

Culture collection no.

DSM 16206, JCM 11807, KCCM 41641, CIP 108441, LMG 24749

[Ref.: #70882]

SI-ID 132012

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus caeni sp. nov., isolated from mangrove sediment.	Mo K, Huang H, Bao S, Hu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003853	2020	*
Phylogeny	Lottiidibacillus patelloidae gen. nov., sp. nov., isolated from the intestinal tract of a marine limpet and reclassification of Bacillus taeanensis as Maribacillus taeanensis gen. nov., comb. nov.	Liu R, Huang Z, Dong C, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-018-01213-z	2019	*
Phylogeny	Bacillus hemicentroti sp. nov., a moderate halophile isolated from a sea urchin.	Chen YG, Zhang YQ, He JW, Klenk HP, Xiao JQ, Zhu HY, Tang SK, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.026732-0	2011	*
Phylogeny	Bacillus hwajinpoensis sp. nov. and an unnamed Bacillus genomospecies, novel members of Bacillus rRNA group 6 isolated from sea water of the East Sea and the Yellow Sea in Korea.	Yoon JH, Kim IG, Kang KH, Oh TK, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.02678-0	2004	*

References

#6325

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16206

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29923

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26294 (see below)

#40002 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#70882

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID132012.1 )

#119993 Collection of Institut Pasteur ; Curators of the CIP; CIP 108441

#26294

IJSEM 803 2004 ( DOI 10.1099/ijs.0.02678-0 , PubMed 15143027 )

* These data were automatically processed and therefore are not curated

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Pseudalkalibacillus hwajinpoensis DSM 16206

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