Name: Siminovitchia farraginis R-6540
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1220

Type strain:

Species: Siminovitchia farraginis

Strain Designation: R-6540

Culture col. no.: DSM 16013, CIP 108820, LMG 22081

Strain history: CIP <- 2005, DSMZ <- P. Scheldeman, Flemish Com. Ministry, Belgium: strain R-6540

NCBI tax ID(s): 254757 (species)

SI-ID 20613

LMG 22081, DSM 16013, CIP 108820

Section

Siminovitchia farraginis R-6540 is an obligate aerobe, spore-forming, mesophilic bacterium that forms irregular colonies and was isolated from milking apparatus, cluster.

colony-forming
Gram-negative
motile
rod-shaped
spore-forming
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Siminovitchia*
	Species	**Siminovitchia farraginis**
	Full Scientific Name (LPSN)	Siminovitchia farraginis (Scheldeman et al. 2004) Gupta et al. 2020

Synonym

Bacillus farraginis

Information on morphological and physiological properties Morphology

[Ref.: #23313]	Gram stain	negative
[Ref.: #119286]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #23313]	Cell length	1.2-4.0 µm

[Ref.: #23313]	Cell width	0.5-0.8 µm

[Ref.: #23313]	Cell shape	rod-shaped
[Ref.: #119286]	Cell shape	rod-shaped

[Ref.: #23313]	Motility	yes
[Ref.: #119286]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.073

[Ref.: #23313]	Colony size	1 mm
[Ref.: #23313]	Colony color	cream or translucent
[Ref.: #23313]	Colony shape	irregular
[Ref.: #23313]	Incubation period	3 days
[Ref.: #23313]	Cultivation medium used	Nutrient agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6151]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #6151]

Culture medium growth

[Ref.: #6151]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6151]

Culture medium composition

expand / minimize

[Ref.: #38322]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #38322]

Culture medium growth

[Ref.: #38322]

Culture medium composition

expand / minimize

[Ref.: #119286]

Culture medium

CIP Medium 72

[Ref.: #119286]

Culture medium growth

[Ref.: #119286]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6151]		growth	30 °C
[Ref.: #23313]		growth	30-45 °C
[Ref.: #23313]	inconsistent	growth	20 °C
[Ref.: #38322]		growth	30 °C
[Ref.: #119286]		growth	22-55 °C
[Ref.: #119286]	no	growth	10 °C

[Ref.: #6151]	Temperature range	mesophilic
[Ref.: #23313]	Temperature range	psychrophilic
[Ref.: #38322]	Temperature range	mesophilic
[Ref.: #119286]	Temperature range	psychrophilic

	Kind of pH		pH
[Ref.: #23313]	inconsistent	growth	9.0
[Ref.: #23313]	no	growth	5.0
[Ref.: #119286]		growth	6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23313]	Oxygen tolerance	obligate aerobe
[Ref.: #119286]	Oxygen tolerance	obligate aerobe

[Ref.: #23312]	Spore description	ellispoidal, paracentral or subterminal, occasionally slightly swollen sporangia
[Ref.: #23312]	Type of spore	endospore
[Ref.: #23312]	Ability of spore formation	yes
[Ref.: #119286]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #23313]	NaCl		growth	7	%
[Ref.: #119286]	NaCl		growth	0-4	%
[Ref.: #119286]	NaCl	no	growth	6	%
[Ref.: #119286]	NaCl	no	growth	8	%
[Ref.: #119286]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23313]	(-)-quinic acid ChEBI	-	carbon source
[Ref.: #23313]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #23313]	2-dehydro-D-gluconate ChEBI	-	carbon source
[Ref.: #23313]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #23313]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #23313]	3-phenylpropionate ChEBI	-	carbon source
[Ref.: #23313]	4-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #23313]	5-aminovaleric acid ChEBI	+	carbon source
[Ref.: #23313]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #23313]	5-dehydro-D-gluconate ChEBI	-	carbon source
[Ref.: #23313]	alpha-lactose ChEBI	-	carbon source
[Ref.: #23313]	amygdalin ChEBI	-	builds acid from
[Ref.: #23313]	arbutin ChEBI	-	builds acid from
[Ref.: #23313]	benzoate ChEBI	-	carbon source
[Ref.: #23313]	betaine ChEBI	-	carbon source
[Ref.: #23313]	casein	-	hydrolysis
[Ref.: #23313]	cellobiose ChEBI	-	builds acid from
[Ref.: #23313]	cellobiose ChEBI	-	carbon source
[Ref.: #23313]	cis-aconitate ChEBI	-	carbon source
[Ref.: #23313]	citrate ChEBI	-	carbon source
[Ref.: #119286]	citrate ChEBI	-	carbon source
[Ref.: #23313]	coumarate ChEBI	-	carbon source
[Ref.: #23313]	D-alanine ChEBI	+	carbon source
[Ref.: #23313]	D-arabinose ChEBI	-	builds acid from
[Ref.: #23313]	D-arabitol ChEBI	-	builds acid from
[Ref.: #23313]	D-arabitol ChEBI	-	carbon source
[Ref.: #23313]	D-fructose ChEBI	-	builds acid from
[Ref.: #23313]	D-fructose ChEBI	-	carbon source
[Ref.: #23313]	D-fucose ChEBI	-	builds acid from
[Ref.: #23313]	D-galactose ChEBI	-	builds acid from
[Ref.: #23313]	D-galactose ChEBI	-	carbon source
[Ref.: #23313]	D-galacturonic acid ChEBI	-	carbon source
[Ref.: #23313]	D-glucarate ChEBI	-	carbon source
[Ref.: #23313]	D-gluconate ChEBI	-	carbon source
[Ref.: #23313]	D-glucosamine ChEBI	+	carbon source
[Ref.: #23313]	D-glucose ChEBI	-	builds acid from
[Ref.: #23313]	D-glucose ChEBI	-	carbon source
[Ref.: #23313]	D-glucuronate ChEBI	-	carbon source
[Ref.: #23313]	D-lyxose ChEBI	-	builds acid from
[Ref.: #23313]	D-lyxose ChEBI	-	carbon source
[Ref.: #23313]	D-malate ChEBI	+	carbon source
[Ref.: #23313]	D-mannitol ChEBI	-	builds acid from
[Ref.: #23313]	D-mannitol ChEBI	-	carbon source
[Ref.: #23313]	D-mannose ChEBI	-	builds acid from
[Ref.: #23313]	D-mannose ChEBI	-	carbon source
[Ref.: #23313]	D-ribose ChEBI	-	builds acid from
[Ref.: #23313]	D-ribose ChEBI	+	carbon source
[Ref.: #23313]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #23313]	D-sorbitol ChEBI	+	carbon source
[Ref.: #23313]	D-tagatose ChEBI	-	builds acid from
[Ref.: #23313]	D-tagatose ChEBI	-	carbon source
[Ref.: #23313]	D-tartrate ChEBI	-	carbon source
[Ref.: #23313]	D-trehalose ChEBI	-	builds acid from
[Ref.: #23313]	D-trehalose ChEBI	-	carbon source
[Ref.: #23313]	D-xylose ChEBI	-	builds acid from
[Ref.: #23313]	D-xylose ChEBI	-	carbon source
[Ref.: #23313]	decanoate ChEBI	-	carbon source
[Ref.: #23313]	erythritol ChEBI	-	builds acid from
[Ref.: #23313]	erythritol ChEBI	-	carbon source
[Ref.: #23313]	esculin ChEBI	-	carbon source
[Ref.: #23313]	esculin ChEBI	-	hydrolysis
[Ref.: #119286]	esculin ChEBI	-	hydrolysis
[Ref.: #23313]	ethanolamine ChEBI	-	carbon source
[Ref.: #23313]	fumarate ChEBI	+	carbon source
[Ref.: #23313]	galactarate ChEBI	-	carbon source
[Ref.: #23313]	galactitol ChEBI	-	builds acid from
[Ref.: #23313]	galactitol ChEBI	+	carbon source
[Ref.: #23313]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #23313]	gentiobiose ChEBI	-	builds acid from
[Ref.: #23313]	gentiobiose ChEBI	-	carbon source
[Ref.: #23313]	gentisate ChEBI	-	carbon source
[Ref.: #23313]	gluconate ChEBI	-	builds acid from
[Ref.: #23313]	glutaric acid ChEBI	+	carbon source
[Ref.: #23313]	glycerate ChEBI	-	carbon source
[Ref.: #23313]	glycerol ChEBI	-	builds acid from
[Ref.: #23313]	glycerol ChEBI	-	carbon source
[Ref.: #23313]	glycogen ChEBI	-	builds acid from
[Ref.: #119286]	hippurate ChEBI	-	hydrolysis
[Ref.: #23313]	histamine ChEBI	+	carbon source
[Ref.: #23313]	inulin ChEBI	-	builds acid from
[Ref.: #23313]	itaconate ChEBI	-	carbon source
[Ref.: #23313]	L-alanine ChEBI	+	carbon source
[Ref.: #23313]	L-arabinose ChEBI	-	builds acid from
[Ref.: #23313]	L-arabinose ChEBI	-	carbon source
[Ref.: #23313]	L-arabitol ChEBI	-	builds acid from
[Ref.: #23313]	L-arabitol ChEBI	-	carbon source
[Ref.: #23313]	L-aspartate ChEBI	+	carbon source
[Ref.: #23313]	L-fucose ChEBI	-	builds acid from
[Ref.: #23313]	L-fucose ChEBI	-	carbon source
[Ref.: #23313]	L-glutamate ChEBI	+	carbon source
[Ref.: #23313]	L-histidine ChEBI	+	carbon source
[Ref.: #23313]	L-malate ChEBI	+	carbon source
[Ref.: #23313]	L-proline ChEBI	+	carbon source
[Ref.: #23313]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #23313]	L-rhamnose ChEBI	-	carbon source
[Ref.: #23313]	L-serine ChEBI	-	carbon source
[Ref.: #23313]	L-sorbose ChEBI	-	builds acid from
[Ref.: #23313]	L-sorbose ChEBI	-	carbon source
[Ref.: #23313]	L-tartrate ChEBI	-	carbon source
[Ref.: #23313]	L-tryptophan ChEBI	+	carbon source
[Ref.: #23313]	L-tyrosine ChEBI	+	carbon source
[Ref.: #23313]	L-xylose ChEBI	-	builds acid from
[Ref.: #23313]	lactate ChEBI	+	carbon source
[Ref.: #23313]	lactose ChEBI	-	builds acid from
[Ref.: #23313]	lactulose ChEBI	-	carbon source
[Ref.: #23313]	malate ChEBI	+	carbon source
[Ref.: #23313]	malonate ChEBI	+	carbon source
[Ref.: #23313]	maltitol ChEBI	-	carbon source
[Ref.: #23313]	maltose ChEBI	-	builds acid from
[Ref.: #23313]	maltose ChEBI	-	carbon source
[Ref.: #23313]	maltotriose ChEBI	-	carbon source
[Ref.: #23313]	melezitose ChEBI	-	builds acid from
[Ref.: #23313]	melezitose ChEBI	-	carbon source
[Ref.: #23313]	melibiose ChEBI	-	builds acid from
[Ref.: #23313]	melibiose ChEBI	-	carbon source
[Ref.: #23313]	meso-tartrate ChEBI	+	carbon source
[Ref.: #23313]	methyl alpha-D-galactoside ChEBI	-	carbon source
[Ref.: #23313]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #23313]	methyl alpha-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #23313]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #23313]	methyl beta-D-galactoside ChEBI	-	carbon source
[Ref.: #23313]	methyl beta-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #23313]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #23313]	myo-inositol ChEBI	-	builds acid from
[Ref.: #23313]	myo-inositol ChEBI	-	carbon source
[Ref.: #23313]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #23313]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #119286]	nitrate ChEBI	-	reduction
[Ref.: #119286]	nitrate ChEBI	-	respiration
[Ref.: #119286]	nitrite ChEBI	-	reduction
[Ref.: #23313]	octanoate ChEBI	-	carbon source
[Ref.: #23313]	palatinose ChEBI	-	carbon source
[Ref.: #23313]	phenylacetate ChEBI	-	carbon source
[Ref.: #23313]	propionate ChEBI	-	carbon source
[Ref.: #23313]	protocatechuate ChEBI	-	carbon source
[Ref.: #23313]	putrescine ChEBI	+	carbon source
[Ref.: #23313]	raffinose ChEBI	-	builds acid from
[Ref.: #23313]	raffinose ChEBI	-	carbon source
[Ref.: #23313]	ribitol ChEBI	-	builds acid from
[Ref.: #23313]	ribitol ChEBI	-	carbon source
[Ref.: #23313]	salicin ChEBI	-	builds acid from
[Ref.: #23313]	starch ChEBI	-	builds acid from
[Ref.: #23313]	starch ChEBI	-	hydrolysis
[Ref.: #23313]	succinate ChEBI	+	carbon source
[Ref.: #23313]	sucrose ChEBI	-	builds acid from
[Ref.: #23313]	sucrose ChEBI	-	carbon source
[Ref.: #23313]	trans-aconitate ChEBI	-	carbon source
[Ref.: #23313]	tricarballylate ChEBI	-	carbon source
[Ref.: #23313]	trigonelline ChEBI	-	carbon source
[Ref.: #23313]	tryptamine ChEBI	-	carbon source
[Ref.: #23313]	turanose ChEBI	-	builds acid from
[Ref.: #23313]	turanose ChEBI	-	carbon source
[Ref.: #23313]	xylitol ChEBI	-	builds acid from
[Ref.: #23313]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119286]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #119286]		acetoin ChEBI	-
[Ref.: #119286]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #119286]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119286]	amylase	-
[Ref.: #119286]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119286]	caseinase	-	3.4.21.50
[Ref.: #23313]	catalase	+	1.11.1.6
[Ref.: #119286]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #23313]	cytochrome oxidase	+	1.9.3.1
[Ref.: #119286]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119286]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #119286]	gelatinase	+/-
[Ref.: #119286]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119286]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119286]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119286]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119286]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119286]	tween esterase	-
[Ref.: #119286]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119286]	2923	not determinedn.d.	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	+	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+	-	+	+	-	+	-	-	+	+	+	+	-	+	-	-	+	-	+	+	+	+	-	+	-	+	-	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119286]	11483	-	-	+	+	-	+	+	-	-	+	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6151]	Sample type/isolated from	milking apparatus, cluster
[Ref.: #6151]	Geographic location (country and/or sea, region)	Lovendegem
[Ref.: #6151]	Country	Belgium
[Ref.: #6151]	Country ISO 3 Code	BEL
[Ref.: #6151]	Continent	Europe

[Ref.: #119286]	Sample type/isolated from	Milking apparratus, cluster
[Ref.: #119286]	Country	Belgium
[Ref.: #119286]	Country ISO 3 Code	BEL
[Ref.: #119286]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Industrial

#Engineered product

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY443036 (>99% sequence identity) for Bacillus farraginis subclade from Microbeatlas

Aquatic Samples	11
Soil Samples	73
Animal Samples	170
Plant Samples	14
Total Samples	268

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6151]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119286]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6151]	Bacillus farraginis strain R-6540 16S ribosomal RNA gene, partial sequence	AY443036	1416	ENA	254757 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Siminovitchia farraginis DSM 16013	GCA_001439965	scaffold	GenBank	254757 tax ID	*
[Ref.: #66792]	Bacillus farraginis strain DSM 16013	254757.3	wgs	PATRIC	254757 tax ID	*

[Ref.: #6151]	GC-content	43.7 mol%
[Ref.: #23313]	GC-content	43.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Siminovitchia farraginis DSM 16013 NCBI: GCA_001439965.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Siminovitchia farraginis DSM 16013 NCBI: GCA_001439965.1
[Ref.: #69480]	flagellated	yes	71.412	no
[Ref.: #69480]	gram-positive	yes	67.303	yes
[Ref.: #69480]	anaerobic	no	98.811	yes
[Ref.: #69480]	aerobic	yes	89.668	yes
[Ref.: #69480]	halophile	yes	54.63	yes
[Ref.: #69480]	spore-forming	yes	97.281	yes
[Ref.: #69480]	glucose-util	yes	83.418	yes
[Ref.: #69480]	motile	yes	90.572	yes
[Ref.: #69480]	thermophile	no	98.367	yes
[Ref.: #69480]	glucose-ferment	no	87.337	no

Availability in culture collections External links

[Ref.: #6151]

Culture collection no.

DSM 16013, CIP 108820, LMG 22081

[Ref.: #70876]

SI-ID 20613

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Bacillus farraginis R-6540T (DSM 16013), a Spore-Forming Bacterium Isolated at Dairy Farms.	Wang JP, Liu B, Liu GH, Ge CB, Xiao RF, Zheng XF, Shi H	Genome Announc	10.1128/genomeA.00562-16	2016	*
Phylogeny	Bacillus composti sp. nov. and Bacillus thermophilus sp. nov., two thermophilic, Fe(III)-reducing bacteria isolated from compost.	Yang G, Chen M, Yu Z, Lu Q, Zhou S	Int J Syst Evol Microbiol	10.1099/ijs.0.049106-0	2013	*
Phylogeny	Bacillus farraginis sp. nov., Bacillus fortis sp. nov. and Bacillus fordii sp. nov., isolated at dairy farms.	Scheldeman P, Rodriguez-Diaz M, Goris J, Pil A, De Clerck E, Herman L, De Vos P, Logan NA, Heyndrickx M	Int J Syst Evol Microbiol	10.1099/ijs.0.63095-0	2004	*

References

#6151

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16013

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23312

Jeroen Heyrman, Bram Vanparys, Niall A. Logan, An Balcaen, Marina Rodríguez-Díaz, Andreas Felske, Paul De Vos: Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands. IJSEM 54: 47 - 57 2004 ( DOI 10.1099/ijs.0.02723-0 , PubMed 14742458 )

#23313

Patsy Scheldeman, Marina Rodríguez-Díaz, Johan Goris, Annelies Pil, Elke De Clerck, Lieve Herman, Paul De Vos, Niall A. Logan, Marc Heyndrickx: Bacillus farraginis sp. nov., Bacillus fortis sp. nov. and Bacillus fordii sp. nov., isolated at dairy farms. IJSEM 54: 1355 - 1364 2004 ( DOI 10.1099/ijs.0.63095-0 , PubMed 15280314 )

#38322 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70876

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID20613.1 )

#119286 Collection of Institut Pasteur ; Curators of the CIP; CIP 108820
* These data were automatically processed and therefore are not curated

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Siminovitchia farraginis DSM 16013

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