Siminovitchia farraginis (DSM 16013, CIP 108820, R-6540)

Name: Siminovitchia farraginis (DSM 16013, CIP 108820, R-6540)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1220

Type strain

Strain Designation R-6540

Culture col. no. DSM 16013 CIP 108820 R-6540 LMG 22081

NCBI tax ID(s) 254757

Special Collections DSMZ CIP Literature strains

Links

Siminovitchia farraginis R-6540 is an obligate aerobe, spore-forming, mesophilic prokaryote that forms irregular colonies and was isolated from milking apparatus, cluster.

spore-forming Gram-negative motile rod-shaped colony-forming obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 20613

LMG 22081,DSM 16013,CIP 108820

@ref 20215

Last LPSN update 2025-12-16 09:47:03

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Siminovitchia

Species Siminovitchia farraginis

Full scientific name Siminovitchia farraginis (Scheldeman et al. 2004) Gupta et al. 2020

Synonyms (1)

Bacillus farraginis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
23313	negative	1.2-4.0 µm	0.5-0.8 µm	rod-shaped
119286	positive			rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
23313	1 mm	cream or translucent	irregular	3 days	Nutrient agar
119286

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6151	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
38322	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119286	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6151	positive	growth	30	mesophilic
23313	positive	growth	30-45
23313	inconsistent	growth	20
38322	positive	growth	30	mesophilic
119286	positive	growth	22-55
119286	negative	growth	10

Culture pH

@ref	Ability	Type	PH
23313	inconsistent	growth	9.0
23313		growth	5.0
119286	positive	growth	6

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
23313	obligate aerobe
119286	obligate aerobe
125439	obligate aerobe	94.8

Spore formation

@ref	Spore description	Type of spore	Confidence
23312	ellispoidal, paracentral or subterminal, occasionally slightly swollen sporangia	endospore
119286
125438			94.317

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23313	NaCl	positive	growth	7 %
119286	NaCl	positive	growth	0-4 %
119286	NaCl		growth	6 %
119286	NaCl		growth	8 %
119286	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23313	17521 ChEBI	(-)-quinic acid	-	carbon source
23313	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
23313	16808 ChEBI	2-dehydro-D-gluconate	-	carbon source
23313	30916 ChEBI	2-oxoglutarate	+	carbon source
23313	37054 ChEBI	3-hydroxybutyrate	+	carbon source
23313	51057 ChEBI	3-phenylpropionate	-	carbon source
23313	17879 ChEBI	4-hydroxybenzoate	-	carbon source
23313	15887 ChEBI	5-aminovaleric acid	+	carbon source
23313	17426 ChEBI	5-dehydro-D-gluconate	-	builds acid from
23313	17426 ChEBI	5-dehydro-D-gluconate	-	carbon source
23313	36219 ChEBI	alpha-lactose	-	carbon source
23313	27613 ChEBI	amygdalin	-	builds acid from
23313	18305 ChEBI	arbutin	-	builds acid from
23313	16150 ChEBI	benzoate	-	carbon source
23313	17750 ChEBI	betaine	-	carbon source
23313		casein	-	hydrolysis
23313	17057 ChEBI	cellobiose	-	builds acid from
23313	17057 ChEBI	cellobiose	-	carbon source
23313	16383 ChEBI	cis-aconitate	-	carbon source
23313	16947 ChEBI	citrate	-	carbon source
119286	16947 ChEBI	citrate	-	carbon source
23313	23399 ChEBI	coumarate	-	carbon source
23313	15570 ChEBI	D-alanine	+	carbon source
23313	17108 ChEBI	D-arabinose	-	builds acid from
23313	18333 ChEBI	D-arabitol	-	builds acid from
23313	18333 ChEBI	D-arabitol	-	carbon source
23313	15824 ChEBI	D-fructose	-	builds acid from
23313	15824 ChEBI	D-fructose	-	carbon source
23313	28847 ChEBI	D-fucose	-	builds acid from
23313	12936 ChEBI	D-galactose	-	builds acid from
23313	12936 ChEBI	D-galactose	-	carbon source
23313	18024 ChEBI	D-galacturonic acid	-	carbon source
23313	30612 ChEBI	D-glucarate	-	carbon source
23313	8391 ChEBI	D-gluconate	-	carbon source
23313	17315 ChEBI	D-glucosamine	+	carbon source
23313	17634 ChEBI	D-glucose	-	builds acid from
23313	17634 ChEBI	D-glucose	-	carbon source
23313	15748 ChEBI	D-glucuronate	-	carbon source
23313	62318 ChEBI	D-lyxose	-	builds acid from
23313	62318 ChEBI	D-lyxose	-	carbon source
23313	15588 ChEBI	D-malate	+	carbon source
23313	16899 ChEBI	D-mannitol	-	builds acid from
23313	16899 ChEBI	D-mannitol	-	carbon source
23313	16024 ChEBI	D-mannose	-	builds acid from
23313	16024 ChEBI	D-mannose	-	carbon source
23313	16988 ChEBI	D-ribose	-	builds acid from
23313	16988 ChEBI	D-ribose	+	carbon source
23313	17924 ChEBI	D-sorbitol	-	builds acid from
23313	17924 ChEBI	D-sorbitol	+	carbon source
23313	16443 ChEBI	D-tagatose	-	builds acid from
23313	16443 ChEBI	D-tagatose	-	carbon source
23313	30927 ChEBI	D-tartrate	-	carbon source
23313	16551 ChEBI	D-trehalose	-	builds acid from
23313	16551 ChEBI	D-trehalose	-	carbon source
23313	65327 ChEBI	D-xylose	-	builds acid from
23313	65327 ChEBI	D-xylose	-	carbon source
23313	27689 ChEBI	decanoate	-	carbon source
23313	17113 ChEBI	erythritol	-	builds acid from
23313	17113 ChEBI	erythritol	-	carbon source
23313	4853 ChEBI	esculin	-	carbon source
23313	4853 ChEBI	esculin	-	hydrolysis
119286	4853 ChEBI	esculin	-	hydrolysis
23313	16000 ChEBI	ethanolamine	-	carbon source
23313	29806 ChEBI	fumarate	+	carbon source
23313	16537 ChEBI	galactarate	-	carbon source
23313	16813 ChEBI	galactitol	-	builds acid from
23313	16813 ChEBI	galactitol	+	carbon source
23313	16865 ChEBI	gamma-aminobutyric acid	+	carbon source
23313	28066 ChEBI	gentiobiose	-	builds acid from
23313	28066 ChEBI	gentiobiose	-	carbon source
23313	58044 ChEBI	gentisate	-	carbon source
23313	24265 ChEBI	gluconate	-	builds acid from
23313	17859 ChEBI	glutaric acid	+	carbon source
23313	33871 ChEBI	glycerate	-	carbon source
23313	17754 ChEBI	glycerol	-	builds acid from
23313	17754 ChEBI	glycerol	-	carbon source
23313	28087 ChEBI	glycogen	-	builds acid from
119286	606565 ChEBI	hippurate	-	hydrolysis
23313	18295 ChEBI	histamine	+	carbon source
23313	15443 ChEBI	inulin	-	builds acid from
23313	17240 ChEBI	itaconate	-	carbon source
23313	16977 ChEBI	L-alanine	+	carbon source
23313	30849 ChEBI	L-arabinose	-	builds acid from
23313	30849 ChEBI	L-arabinose	-	carbon source
23313	18403 ChEBI	L-arabitol	-	builds acid from
23313	18403 ChEBI	L-arabitol	-	carbon source
23313	29991 ChEBI	L-aspartate	+	carbon source
23313	18287 ChEBI	L-fucose	-	builds acid from
23313	18287 ChEBI	L-fucose	-	carbon source
23313	29985 ChEBI	L-glutamate	+	carbon source
23313	15971 ChEBI	L-histidine	+	carbon source
23313	15589 ChEBI	L-malate	+	carbon source
23313	17203 ChEBI	L-proline	+	carbon source
23313	62345 ChEBI	L-rhamnose	-	builds acid from
23313	62345 ChEBI	L-rhamnose	-	carbon source
23313	17115 ChEBI	L-serine	-	carbon source
23313	17266 ChEBI	L-sorbose	-	builds acid from
23313	17266 ChEBI	L-sorbose	-	carbon source
23313	30924 ChEBI	L-tartrate	-	carbon source
23313	16828 ChEBI	L-tryptophan	+	carbon source
23313	17895 ChEBI	L-tyrosine	+	carbon source
23313	65328 ChEBI	L-xylose	-	builds acid from
23313	24996 ChEBI	lactate	+	carbon source
23313	17716 ChEBI	lactose	-	builds acid from
23313	6359 ChEBI	lactulose	-	carbon source
23313	25115 ChEBI	malate	+	carbon source
23313	15792 ChEBI	malonate	+	carbon source
23313	68428 ChEBI	maltitol	-	carbon source
23313	17306 ChEBI	maltose	-	builds acid from
23313	17306 ChEBI	maltose	-	carbon source
23313	61993 ChEBI	maltotriose	-	carbon source
23313	6731 ChEBI	melezitose	-	builds acid from
23313	6731 ChEBI	melezitose	-	carbon source
23313	28053 ChEBI	melibiose	-	builds acid from
23313	28053 ChEBI	melibiose	-	carbon source
23313	30928 ChEBI	meso-tartrate	+	carbon source
23313	55507 ChEBI	methyl alpha-D-galactoside	-	carbon source
23313	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
23313	320061 ChEBI	methyl alpha-D-glucopyranoside	-	carbon source
23313	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
23313	17540 ChEBI	methyl beta-D-galactoside	-	carbon source
23313	320055 ChEBI	methyl beta-D-glucopyranoside	-	carbon source
23313	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
23313	17268 ChEBI	myo-inositol	-	builds acid from
23313	17268 ChEBI	myo-inositol	-	carbon source
23313	506227 ChEBI	N-acetylglucosamine	-	builds acid from
23313	506227 ChEBI	N-acetylglucosamine	-	carbon source
119286	17632 ChEBI	nitrate	-	reduction
119286	17632 ChEBI	nitrate	-	respiration
119286	16301 ChEBI	nitrite	-	reduction
23313	25646 ChEBI	octanoate	-	carbon source
23313	18394 ChEBI	palatinose	-	carbon source
23313	18401 ChEBI	phenylacetate	-	carbon source
23313	17272 ChEBI	propionate	-	carbon source
23313	36241 ChEBI	protocatechuate	-	carbon source
23313	17148 ChEBI	putrescine	+	carbon source
23313	16634 ChEBI	raffinose	-	builds acid from
23313	16634 ChEBI	raffinose	-	carbon source
23313	15963 ChEBI	ribitol	-	builds acid from
23313	15963 ChEBI	ribitol	-	carbon source
23313	17814 ChEBI	salicin	-	builds acid from
23313	28017 ChEBI	starch	-	builds acid from
23313	28017 ChEBI	starch	-	hydrolysis
23313	30031 ChEBI	succinate	+	carbon source
23313	17992 ChEBI	sucrose	-	builds acid from
23313	17992 ChEBI	sucrose	-	carbon source
23313	15708 ChEBI	trans-aconitate	-	carbon source
23313	62517 ChEBI	tricarballylate	-	carbon source
23313	18123 ChEBI	trigonelline	-	carbon source
23313	16765 ChEBI	tryptamine	-	carbon source
23313	32528 ChEBI	turanose	-	builds acid from
23313	32528 ChEBI	turanose	-	carbon source
23313	17151 ChEBI	xylitol	-	builds acid from
23313	17151 ChEBI	xylitol	-	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119286	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
119286	15688 ChEBI	acetoin	-
119286	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
119286	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119286	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
119286	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119286	caseinase	-	3.4.21.50
23313	catalase	+	1.11.1.6
119286	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
23313	cytochrome oxidase	+	1.9.3.1
119286	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119286	gamma-glutamyltransferase	+	2.3.2.2
119286	gelatinase	+/-
119286	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119286	lipase	-
68382	lipase (C 14)	-		from API zym
119286	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119286	ornithine decarboxylase	-	4.1.1.17
119286	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
119286	tween esterase	-
119286	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119286	-	-	+	+	-	+	+	-	-	+	-	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119286	not determinedn.d.	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	+	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+	-	+	+	-	+	-	-	+	+	+	+	-	+	-	-	+	-	+	+	+	+	-	+	-	+	-	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Engineered product

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6151	milking apparatus, cluster	Lovendegem	Belgium	BEL	Europe
119286	Milking apparratus, cluster		Belgium	BEL	Europe

Taxonmaps

69479

Global distribution of 16S sequence AY443036 (>99% sequence identity) for Bacillus farraginis subclade from Microbeatlas

Aquatic Samples	11
Soil Samples	73
Animal Samples	170
Plant Samples	14
Total Samples	268

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6151	1	Risk group (German classification) According to TRBA 466
119286	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM143996v1 assembly for Siminovitchia farraginis DSM 16013	scaffold	GCA_001439965	254757.3	2744054489	254757	8.51

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6151	Bacillus farraginis strain R-6540 16S ribosomal RNA gene, partial sequence	AY443036	1416		254757

GC content

@ref	GC-content (mol%)	Method
6151	43.7
23313	43.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Siminovitchia farraginis DSM 16013
NCBI: GCA_001439965

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	86.10	no
125439	motility	BacteriaNetⓘ	yes	72.50	no
125439	gram_stain	BacteriaNetⓘ	variable	75.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Siminovitchia farraginis DSM 16013
NCBI: GCA_001439965.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	59.78	yes
125438	anaerobic	anaerobicⓘ	no	96.90	yes
125438	aerobic	aerobicⓘ	yes	76.90	yes
125438	spore-forming	spore-formingⓘ	yes	94.32	no
125438	thermophilic	thermophileⓘ	no	89.17	yes
125438	flagellated	motile2+ⓘ	yes	83.09	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Bacillus farraginis R-6540T (DSM 16013), a Spore-Forming Bacterium Isolated at Dairy Farms.	Wang JP, Liu B, Liu GH, Ge CB, Xiao RF, Zheng XF, Shi H	Genome Announc	10.1128/genomeA.00562-16	2016
Phylogeny	Bacillus composti sp. nov. and Bacillus thermophilus sp. nov., two thermophilic, Fe(III)-reducing bacteria isolated from compost.	Yang G, Chen M, Yu Z, Lu Q, Zhou S	Int J Syst Evol Microbiol	10.1099/ijs.0.049106-0	2013
Phylogeny	Bacillus farraginis sp. nov., Bacillus fortis sp. nov. and Bacillus fordii sp. nov., isolated at dairy farms.	Scheldeman P, Rodriguez-Diaz M, Goris J, Pil A, De Clerck E, Herman L, De Vos P, Logan NA, Heyndrickx M	Int J Syst Evol Microbiol	10.1099/ijs.0.63095-0	2004

References

#6151	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16013
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23312	Jeroen Heyrman, Bram Vanparys, Niall A. Logan, An Balcaen, Marina Rodríguez-Díaz, Andreas Felske, Paul De Vos: Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands. IJSEM 54: 47 - 57 2004 ( DOI 10.1099/ijs.0.02723-0 , PubMed 14742458 )
#23313	Patsy Scheldeman, Marina Rodríguez-Díaz, Johan Goris, Annelies Pil, Elke De Clerck, Lieve Herman, Paul De Vos, Niall A. Logan, Marc Heyndrickx: Bacillus farraginis sp. nov., Bacillus fortis sp. nov. and Bacillus fordii sp. nov., isolated at dairy farms. IJSEM 54: 1355 - 1364 2004 ( DOI 10.1099/ijs.0.63095-0 , PubMed 15280314 )
#38322	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119286	Collection of Institut Pasteur ; Curators of the CIP; CIP 108820
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Siminovitchia farraginis (DSM 16013, CIP 108820, R-6540)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001439965

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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