Siminovitchia fortis R-6514 is an obligate aerobe, spore-forming, mesophilic prokaryote that forms circular colonies and was isolated from milking apparatus, cluster.
spore-forming Gram-negative motile rod-shaped colony-forming obligate aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Bacillota |
| Class Bacilli |
| Order Caryophanales |
| Family Bacillaceae |
| Genus Siminovitchia |
| Species Siminovitchia fortis |
| Full scientific name Siminovitchia fortis (Scheldeman et al. 2004) Gupta et al. 2020 |
| Synonyms (1) |
| @ref | Colony size | Colony color | Colony shape | Incubation period | Medium used | |
|---|---|---|---|---|---|---|
| 23313 | 1 mm | cream | circular | 3 days | Nutrient agar | |
| 119434 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 6150 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | Medium recipe at MediaDive | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water | ||
| 23313 | Nutrient agar (NA) | ||||
| 39789 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 119434 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 23313 | 17521 ChEBI | (-)-quinic acid | - | carbon source | |
| 23313 | 16808 ChEBI | 2-dehydro-D-gluconate | - | builds acid from | |
| 23313 | 16808 ChEBI | 2-dehydro-D-gluconate | + | carbon source | |
| 23313 | 30916 ChEBI | 2-oxoglutarate | + | carbon source | |
| 23313 | 37054 ChEBI | 3-hydroxybutyrate | - | carbon source | |
| 23313 | 51057 ChEBI | 3-phenylpropionate | - | carbon source | |
| 23313 | 17879 ChEBI | 4-hydroxybenzoate | - | carbon source | |
| 23313 | 15887 ChEBI | 5-aminovaleric acid | + | carbon source | |
| 23313 | 17426 ChEBI | 5-dehydro-D-gluconate | - | builds acid from | |
| 23313 | 17426 ChEBI | 5-dehydro-D-gluconate | + | carbon source | |
| 23313 | 36219 ChEBI | alpha-lactose | - | carbon source | |
| 23313 | 27613 ChEBI | amygdalin | - | builds acid from | |
| 23313 | 18305 ChEBI | arbutin | - | builds acid from | |
| 23313 | 16150 ChEBI | benzoate | - | carbon source | |
| 23313 | 17750 ChEBI | betaine | - | carbon source | |
| 23313 | casein | - | hydrolysis | ||
| 23313 | 17057 ChEBI | cellobiose | - | builds acid from | |
| 23313 | 17057 ChEBI | cellobiose | - | carbon source | |
| 23313 | 16383 ChEBI | cis-aconitate | - | carbon source | |
| 23313 | 16947 ChEBI | citrate | + | carbon source | |
| 119434 | 16947 ChEBI | citrate | - | carbon source | |
| 23313 | 23399 ChEBI | coumarate | - | carbon source | |
| 23313 | 15570 ChEBI | D-alanine | - | carbon source | |
| 23313 | 17108 ChEBI | D-arabinose | - | builds acid from | |
| 23313 | 18333 ChEBI | D-arabitol | - | builds acid from | |
| 23313 | 18333 ChEBI | D-arabitol | - | carbon source | |
| 23313 | 15824 ChEBI | D-fructose | - | builds acid from | |
| 23313 | 15824 ChEBI | D-fructose | - | carbon source | |
| 23313 | 28847 ChEBI | D-fucose | - | builds acid from | |
| 23313 | 12936 ChEBI | D-galactose | - | builds acid from | |
| 23313 | 12936 ChEBI | D-galactose | - | carbon source | |
| 23313 | 18024 ChEBI | D-galacturonic acid | - | carbon source | |
| 23313 | 30612 ChEBI | D-glucarate | - | carbon source | |
| 23313 | 8391 ChEBI | D-gluconate | + | carbon source | |
| 23313 | 17315 ChEBI | D-glucosamine | + | carbon source | |
| 23313 | 17634 ChEBI | D-glucose | - | builds acid from | |
| 23313 | 17634 ChEBI | D-glucose | + | carbon source | |
| 23313 | 15748 ChEBI | D-glucuronate | + | carbon source | |
| 23313 | 62318 ChEBI | D-lyxose | - | builds acid from | |
| 23313 | 62318 ChEBI | D-lyxose | - | carbon source | |
| 23313 | 15588 ChEBI | D-malate | + | carbon source | |
| 23313 | 16899 ChEBI | D-mannitol | - | builds acid from | |
| 23313 | 16899 ChEBI | D-mannitol | - | carbon source | |
| 23313 | 16024 ChEBI | D-mannose | - | builds acid from | |
| 23313 | 16024 ChEBI | D-mannose | - | carbon source | |
| 23313 | 16988 ChEBI | D-ribose | - | builds acid from | |
| 23313 | 16988 ChEBI | D-ribose | + | carbon source | |
| 23313 | 17924 ChEBI | D-sorbitol | - | builds acid from | |
| 23313 | 17924 ChEBI | D-sorbitol | - | carbon source | |
| 23313 | 16443 ChEBI | D-tagatose | - | builds acid from | |
| 23313 | 16443 ChEBI | D-tagatose | - | carbon source | |
| 23313 | 30927 ChEBI | D-tartrate | - | carbon source | |
| 23313 | 16551 ChEBI | D-trehalose | - | builds acid from | |
| 23313 | 16551 ChEBI | D-trehalose | - | carbon source | |
| 23313 | 65327 ChEBI | D-xylose | - | builds acid from | |
| 23313 | 65327 ChEBI | D-xylose | - | carbon source | |
| 23313 | 27689 ChEBI | decanoate | - | carbon source | |
| 23313 | 17113 ChEBI | erythritol | - | builds acid from | |
| 23313 | 17113 ChEBI | erythritol | + | carbon source | |
| 23313 | 4853 ChEBI | esculin | - | hydrolysis | |
| 23313 | 4853 ChEBI | esculin | + | carbon source | |
| 119434 | 4853 ChEBI | esculin | - | hydrolysis | |
| 23313 | 16000 ChEBI | ethanolamine | + | carbon source | |
| 23313 | 29806 ChEBI | fumarate | - | carbon source | |
| 23313 | 16537 ChEBI | galactarate | - | carbon source | |
| 23313 | 16813 ChEBI | galactitol | - | builds acid from | |
| 23313 | 16813 ChEBI | galactitol | - | carbon source | |
| 23313 | 16865 ChEBI | gamma-aminobutyric acid | +/- | carbon source | |
| 23313 | 28066 ChEBI | gentiobiose | - | builds acid from | |
| 23313 | 28066 ChEBI | gentiobiose | - | carbon source | |
| 23313 | 58044 ChEBI | gentisate | - | carbon source | |
| 23313 | 24265 ChEBI | gluconate | - | builds acid from | |
| 23313 | 17859 ChEBI | glutaric acid | + | carbon source | |
| 23313 | 33871 ChEBI | glycerate | + | carbon source | |
| 23313 | 17754 ChEBI | glycerol | - | builds acid from | |
| 23313 | 17754 ChEBI | glycerol | - | carbon source | |
| 23313 | 28087 ChEBI | glycogen | - | builds acid from | |
| 119434 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 23313 | 18295 ChEBI | histamine | + | carbon source | |
| 23313 | 15443 ChEBI | inulin | - | builds acid from | |
| 23313 | 17240 ChEBI | itaconate | - | carbon source | |
| 23313 | 16977 ChEBI | L-alanine | +/- | carbon source | |
| 23313 | 30849 ChEBI | L-arabinose | - | builds acid from | |
| 23313 | 30849 ChEBI | L-arabinose | - | carbon source | |
| 23313 | 18403 ChEBI | L-arabitol | - | builds acid from | |
| 23313 | 18403 ChEBI | L-arabitol | - | carbon source | |
| 23313 | 29991 ChEBI | L-aspartate | - | carbon source | |
| 23313 | 18287 ChEBI | L-fucose | - | builds acid from | |
| 23313 | 18287 ChEBI | L-fucose | - | carbon source | |
| 23313 | 29985 ChEBI | L-glutamate | +/- | carbon source | |
| 23313 | 15971 ChEBI | L-histidine | + | carbon source | |
| 23313 | 15589 ChEBI | L-malate | + | carbon source | |
| 23313 | 17203 ChEBI | L-proline | +/- | carbon source | |
| 23313 | 62345 ChEBI | L-rhamnose | - | builds acid from | |
| 23313 | 62345 ChEBI | L-rhamnose | - | carbon source | |
| 23313 | 17115 ChEBI | L-serine | - | carbon source | |
| 23313 | 17266 ChEBI | L-sorbose | - | builds acid from | |
| 23313 | 17266 ChEBI | L-sorbose | + | carbon source | |
| 23313 | 30924 ChEBI | L-tartrate | + | carbon source | |
| 23313 | 16828 ChEBI | L-tryptophan | + | carbon source | |
| 23313 | 17895 ChEBI | L-tyrosine | + | carbon source | |
| 23313 | 65328 ChEBI | L-xylose | - | builds acid from | |
| 23313 | 24996 ChEBI | lactate | + | carbon source | |
| 23313 | 17716 ChEBI | lactose | - | builds acid from | |
| 23313 | 6359 ChEBI | lactulose | - | carbon source | |
| 23313 | 25115 ChEBI | malate | +/- | carbon source | |
| 23313 | 15792 ChEBI | malonate | + | carbon source | |
| 23313 | 68428 ChEBI | maltitol | - | carbon source | |
| 23313 | 17306 ChEBI | maltose | - | builds acid from | |
| 23313 | 17306 ChEBI | maltose | - | carbon source | |
| 23313 | 61993 ChEBI | maltotriose | - | carbon source | |
| 23313 | 6731 ChEBI | melezitose | - | builds acid from | |
| 23313 | 6731 ChEBI | melezitose | - | carbon source | |
| 23313 | 28053 ChEBI | melibiose | - | builds acid from | |
| 23313 | 28053 ChEBI | melibiose | + | carbon source | |
| 23313 | 30928 ChEBI | meso-tartrate | - | carbon source | |
| 23313 | 55507 ChEBI | methyl alpha-D-galactoside | - | carbon source | |
| 23313 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | |
| 23313 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | carbon source | |
| 23313 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | |
| 23313 | 17540 ChEBI | methyl beta-D-galactoside | - | carbon source | |
| 23313 | 320055 ChEBI | methyl beta-D-glucopyranoside | - | carbon source | |
| 23313 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | |
| 23313 | 17268 ChEBI | myo-inositol | - | builds acid from | |
| 23313 | 17268 ChEBI | myo-inositol | - | carbon source | |
| 23313 | 506227 ChEBI | N-acetylglucosamine | - | builds acid from | |
| 23313 | 506227 ChEBI | N-acetylglucosamine | - | carbon source | |
| 119434 | 17632 ChEBI | nitrate | - | reduction | |
| 119434 | 17632 ChEBI | nitrate | - | respiration | |
| 119434 | 16301 ChEBI | nitrite | - | reduction | |
| 23313 | 25646 ChEBI | octanoate | - | carbon source | |
| 23313 | 18394 ChEBI | palatinose | - | carbon source | |
| 23313 | 18401 ChEBI | phenylacetate | + | carbon source | |
| 23313 | 17272 ChEBI | propionate | - | carbon source | |
| 23313 | 36241 ChEBI | protocatechuate | + | carbon source | |
| 23313 | 17148 ChEBI | putrescine | + | carbon source | |
| 23313 | 16634 ChEBI | raffinose | - | builds acid from | |
| 23313 | 16634 ChEBI | raffinose | - | carbon source | |
| 23313 | 15963 ChEBI | ribitol | - | builds acid from | |
| 23313 | 15963 ChEBI | ribitol | - | carbon source | |
| 23313 | 17814 ChEBI | salicin | - | builds acid from | |
| 23313 | 28017 ChEBI | starch | - | builds acid from | |
| 23313 | 28017 ChEBI | starch | - | hydrolysis | |
| 23313 | 30031 ChEBI | succinate | - | carbon source | |
| 23313 | 17992 ChEBI | sucrose | - | builds acid from | |
| 23313 | 17992 ChEBI | sucrose | - | carbon source | |
| 23313 | 15708 ChEBI | trans-aconitate | - | carbon source | |
| 23313 | 62517 ChEBI | tricarballylate | - | carbon source | |
| 23313 | 18123 ChEBI | trigonelline | - | carbon source | |
| 23313 | 16765 ChEBI | tryptamine | - | carbon source | |
| 23313 | 32528 ChEBI | turanose | - | builds acid from | |
| 23313 | 32528 ChEBI | turanose | - | carbon source | |
| 23313 | 17151 ChEBI | xylitol | - | builds acid from | |
| 23313 | 17151 ChEBI | xylitol | - | carbon source |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 119434 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 119434 | amylase | - | ||
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 119434 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 119434 | caseinase | - | 3.4.21.50 | |
| 23313 | catalase | + | 1.11.1.6 | |
| 119434 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 23313 | cytochrome oxidase | + | 1.9.3.1 | |
| 119434 | DNase | + | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 119434 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 119434 | gelatinase | +/- | ||
| 119434 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 119434 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 119434 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 119434 | ornithine decarboxylase | - | 4.1.1.17 | |
| 119434 | oxidase | + | ||
| 119434 | phenylalanine ammonia-lyase | + | 4.3.1.24 | |
| 119434 | protease | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 119434 | tryptophan deaminase | - | ||
| 119434 | tween esterase | + | ||
| 119434 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
Global distribution of 16S sequence AY443038 (>99% sequence identity) for Bacillus fortis from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM360536v2 assembly for Siminovitchia fortis DSM 16012 | contig | 254758 | 53.33 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 6150 | Bacillus fortis strain R-6514 16S ribosomal RNA gene, partial sequence | AY443038 | 1541 | 254758 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 85.30 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 76.30 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 86.60 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 72.50 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 63.20 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 93.11 | yes |
| 125438 | spore-forming | spore-formingⓘ | yes | 90.85 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 75.54 | no |
| 125438 | thermophilic | thermophileⓘ | no | 84.89 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 84.21 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Bacillus acidinfaciens sp. nov., isolated from farmland soil. | Sun L, Chen Y, Tian W, Yao L, Chen Z, Ouyang W | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003271 | 2019 | |
| Phylogeny | Bacillus terrae sp. nov. isolated from Cistus ladanifer rhizosphere soil. | Diez-Mendez A, Rivas R, Mateos PF, Martinez-Molina E, Santin PJ, Sanchez-Rodriguez JA, Velazquez E | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001742 | 2017 | |
| Phylogeny | Bacillus composti sp. nov. and Bacillus thermophilus sp. nov., two thermophilic, Fe(III)-reducing bacteria isolated from compost. | Yang G, Chen M, Yu Z, Lu Q, Zhou S | Int J Syst Evol Microbiol | 10.1099/ijs.0.049106-0 | 2013 | |
| Phylogeny | Bacillus farraginis sp. nov., Bacillus fortis sp. nov. and Bacillus fordii sp. nov., isolated at dairy farms. | Scheldeman P, Rodriguez-Diaz M, Goris J, Pil A, De Clerck E, Herman L, De Vos P, Logan NA, Heyndrickx M | Int J Syst Evol Microbiol | 10.1099/ijs.0.63095-0 | 2004 |
| #6150 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16012 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #23312 | Jeroen Heyrman, Bram Vanparys, Niall A. Logan, An Balcaen, Marina Rodríguez-Díaz, Andreas Felske, Paul De Vos: Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands. IJSEM 54: 47 - 57 2004 ( DOI 10.1099/ijs.0.02723-0 , PubMed 14742458 ) |
| #23313 | Patsy Scheldeman, Marina Rodríguez-Díaz, Johan Goris, Annelies Pil, Elke De Clerck, Lieve Herman, Paul De Vos, Niall A. Logan, Marc Heyndrickx: Bacillus farraginis sp. nov., Bacillus fortis sp. nov. and Bacillus fordii sp. nov., isolated at dairy farms. IJSEM 54: 1355 - 1364 2004 ( DOI 10.1099/ijs.0.63095-0 , PubMed 15280314 ) |
| #39789 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #119434 | Collection of Institut Pasteur ; Curators of the CIP; CIP 108822 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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