Name: Sorangium ambruticinum So ce176
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12131

Type strain:

Species: Sorangium ambruticinum

Strain Designation: So ce176

Culture col. no.: DSM 53252, NCCB 100639, Soce 176

Strain history: <- H. Reichenbach, GBF; So ce176

NCBI tax ID(s): 2093422 (species)

SI-ID 216302

DSM 53252

Section

Sorangium ambruticinum So ce176 is a spore-forming, mesophilic, Gram-negative bacterium that builds a fruiting body and was isolated from soil with plant residues.

Gram-negative
rod-shaped
spore-forming
mesophilic
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Polyangiaceae*
	Genus	*Sorangium*
	Species	**Sorangium ambruticinum**
	Full Scientific Name (LPSN)	Sorangium ambruticinum Mohr et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66744]	Gram stain	negative

[Ref.: #66744]	Cell length	3.3-7.2 µm

[Ref.: #66744]	Cell width	0.8-1.3 µm

[Ref.: #66744]	Cell shape	rod-shaped

[Ref.: #66744]	Motility	no

[Ref.: #66744]	Colony color	orange
[Ref.: #66744]	Cultivation medium used	P agar

[Ref.: #66744]	Colony color	orange
[Ref.: #66744]	Cultivation medium used	CY-AGAR

[Ref.: #66744]	Colony color	orange
[Ref.: #66744]	Cultivation medium used	liquid medium

[Ref.: #18281]	Multicellular complex forming ability	yes *
[Ref.: #18281]	Multicellular complex name	fruiting body *

Information on culture and growth conditions Culture and growth conditions

[Ref.: #14922]

Culture medium

VY/2 AGAR (DSMZ Medium 9)

[Ref.: #14922]

Culture medium growth

[Ref.: #14922]

Culture medium link

Medium recipe at MediaDive

[Ref.: #14922]

Culture medium composition

expand / minimize

[Ref.: #66744]

Culture medium

CY-AGAR

[Ref.: #66744]

Culture medium growth

[Ref.: #66744]

Culture medium

liquid medium

[Ref.: #66744]

Culture medium growth

[Ref.: #66744]

Culture medium

P agar

[Ref.: #66744]

Culture medium growth

		Temperature
[Ref.: #14922]	growth	28 °C
[Ref.: #66744]	optimum	30 °C
[Ref.: #66744]	growth	18-37 °C

[Ref.: #14922]	Temperature range	mesophilic
[Ref.: #66744]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #66744]			optimum	7.2
[Ref.: #66744]			growth	6.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66744]	Spore description	0.8 µm wide and 1.2 µm long.
[Ref.: #66744]	Type of spore	myxospore
[Ref.: #66744]	Ability of spore formation	yes

[Ref.: #66744]

Observation

Young colonies on VY/2 agar are transparent and show distinctive swarming activity. After several weeks, colour changes to grey-black. On Stan 21 with filter paper, the filter is degraded completely after 19 days and agar is corroded. Orange to black coloured scattered sporangioles can be observed on VY/2 and Stan 21 with filter paper after several weeks.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #66744]	ampicillin ChEBI				yes	50	µg/mL
[Ref.: #66744]	bacitracin ChEBI	yes	50	µg/mL
[Ref.: #66744]	cephalosporin ChEBI	yes	50	µg/mL
[Ref.: #66744]	fusidate ChEBI	yes	50	µg/mL
[Ref.: #66744]	gentamicin ChEBI				yes	50	µg/mL
[Ref.: #66744]	hygromycin ChEBI				yes	50	µg/mL
[Ref.: #66744]	kanamycin ChEBI				yes	50	µg/mL
[Ref.: #66744]	oxytetracycline ChEBI				yes	50	µg/mL
[Ref.: #66744]	polymyxin ChEBI				yes	50	µg/mL
[Ref.: #66744]	spectinomycin ChEBI	yes	50	µg/mL
[Ref.: #66744]	thiostrepton ChEBI	yes	50	µg/mL
[Ref.: #66744]	trimethoprim ChEBI				yes	50	µg/mL
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #66744]	acid phosphatase	+	3.1.3.2
[Ref.: #66744]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66744]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #66744]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66744]	alpha-galactosidase	-	3.2.1.22
[Ref.: #66744]	alpha-glucosidase	-	3.2.1.20
[Ref.: #66744]	alpha-mannosidase	-	3.2.1.24
[Ref.: #66744]	beta-galactosidase	-	3.2.1.23
[Ref.: #66744]	beta-glucosidase	+	3.2.1.21
[Ref.: #66744]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66744]	catalase	+	1.11.1.6
[Ref.: #66744]	cystine arylamidase	+	3.4.11.3
[Ref.: #66744]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66744]	esterase (C 4)	+
[Ref.: #66744]	esterase Lipase (C 8)	+
[Ref.: #66744]	leucine aminopeptidase	+	3.4.1.1
[Ref.: #66744]	leucine arylamidase	+	3.4.11.1
[Ref.: #66744]	lipase (C 14)	-
[Ref.: #66744]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #66744]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66744]	trypsin	+	3.4.21.4
[Ref.: #66744]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #14922]	Sample type/isolated from	soil with plant residues
[Ref.: #14922]	Country	Hungary
[Ref.: #14922]	Country ISO 3 Code	HUN
[Ref.: #14922]	Continent	Europe

[Ref.: #66744]	Sample type/isolated from	soil
[Ref.: #66744]	Country	Hungary
[Ref.: #66744]	Country ISO 3 Code	HUN
[Ref.: #66744]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #14922]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

[Ref.: #66744]

GC-content

72 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #14922]

Culture collection no.

DSM 53252, NCCB 100639, Soce 176

[Ref.: #81350]

SI-ID 216302

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	A polyphasic approach leads to seven new species of the cellulose-decomposing genus Sorangium, Sorangium ambruticinum sp. nov., Sorangium arenae sp. nov., Sorangium bulgaricum sp. nov., Sorangium dawidii sp. nov., Sorangium kenyense sp. nov., Sorangium orientale sp. nov. and Sorangium reichenbachii sp. nov.	Mohr KI, Wolf C, Nubel U, Szafranska AK, Steglich M, Hennessen F, Gemperlein K, Kampfer P, Martin K, Muller R, Wink J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003034	2018	*

References

#14922

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 53252

#18281

Reichenbach, H.: Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ . Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66744

Kathrin I. Mohr, Corinna Wolf, Ulrich Nübel, Anna K. Szafranska, Matthias Steglich, Fabienne Hennessen, Katja Gemperlein, Peter Kaempfer, Karin Martin, Rolf Möller and Joachim Wink: A polyphasic approach leads to seven new species of the cellulose-decomposing genus Sorangium, Sorangium ambruticinum sp. nov., Sorangium arenae sp. nov., Sorangium bulgaricum sp. nov., Sorangium dawidii sp. nov., Sorangium kenyense sp. nov., Sorangium orientale sp. nov. and Sorangium reichenbachii sp. nov.. IJSEM 68: 3576 - 3586 2018 ( DOI 10.1099/ijsem.0.003034 , PubMed 30234476 )

#81350

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID216302.1 )

* These data were automatically processed and therefore are not curated

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