Strain identifier

BacDive ID: 12131

Type strain: Yes

Species: Sorangium ambruticinum

Strain Designation: So ce176

Strain history: <- H. Reichenbach, GBF; So ce176

NCBI tax ID(s): 2093422 (species)

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General

@ref: 14922

BacDive-ID: 12131

DSM-Number: 53252

keywords: Bacteria, spore-forming, mesophilic, Gram-negative, rod-shaped

description: Sorangium ambruticinum So ce176 is a spore-forming, mesophilic, Gram-negative bacterium that builds a fruiting body and was isolated from soil with plant residues.

NCBI tax id

  • NCBI tax id: 2093422
  • Matching level: species

strain history

  • @ref: 14922
  • history: <- H. Reichenbach, GBF; So ce176

doi: 10.13145/bacdive12131.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Myxococcales
  • family: Polyangiaceae
  • genus: Sorangium
  • species: Sorangium ambruticinum
  • full scientific name: Sorangium ambruticinum Mohr et al. 2018

@ref: 14922

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Myxococcales

family: Polyangiaceae

genus: Sorangium

species: Sorangium ambruticinum

full scientific name: Sorangium ambruticinum Mohr et al. 2018

strain designation: So ce176

type strain: yes

Morphology

cell morphology

  • @ref: 66744
  • gram stain: negative
  • cell length: 3.3-7.2 µm
  • cell width: 0.8-1.3 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

@refcolony colormedium used
66744orangeP agar
66744orangeCY-AGAR
66744orangeliquid medium

multicellular morphology

  • @ref: 18281
  • forms multicellular complex: yes
  • complex name: fruiting body

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
14922VY/2 AGAR (DSMZ Medium 9)yeshttps://mediadive.dsmz.de/medium/9Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
66744CY-AGARyes
66744liquid mediumyes
66744P agaryes

culture temp

@refgrowthtypetemperaturerange
14922positivegrowth28mesophilic
66744positiveoptimum30mesophilic
66744positivegrowth18-37

culture pH

@refabilitytypepH
66744positiveoptimum7.2
66744positivegrowth6.5-8.0

Physiology and metabolism

spore formation

  • @ref: 66744
  • spore description: 0.8 µm wide and 1.2 µm long.
  • type of spore: myxospore
  • spore formation: yes

observation

  • @ref: 66744
  • observation: Young colonies on VY/2 agar are transparent and show distinctive swarming activity. After several weeks, colour changes to grey-black. On Stan 21 with filter paper, the filter is degraded completely after 19 days and agar is corroded. Orange to black coloured scattered sporangioles can be observed on VY/2 and Stan 21 with filter paper after several weeks.

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
6674428669bacitracinyesyes50 µg/mL
6674423066cephalosporinyesyes50 µg/mL
6674471321fusidateyesyes50 µg/mL
667449215spectinomycinyesyes50 µg/mL
6674429693thiostreptonyesyes50 µg/mL
6674428971ampicillinyesyes50 µg/mL
6674417833gentamicinyesyes50 µg/mL
6674424753hygromycinyesyes50 µg/mL
667446104kanamycinyesyes50 µg/mL
6674427701oxytetracyclineyesyes50 µg/mL
6674459062polymyxinyesyes50 µg/mL
6674445924trimethoprimyesyes50 µg/mL

enzymes

@refvalueactivityec
66744alpha-fucosidase-3.2.1.51
66744alpha-galactosidase-3.2.1.22
66744alpha-glucosidase-3.2.1.20
66744alpha-mannosidase-3.2.1.24
66744beta-galactosidase-3.2.1.23
66744beta-glucuronidase-3.2.1.31
66744lipase (C 14)-
66744acid phosphatase+3.1.3.2
66744alkaline phosphatase+3.1.3.1
66744alpha-chymotrypsin+3.4.21.1
66744beta-glucosidase+3.2.1.21
66744catalase+1.11.1.6
66744cystine arylamidase+3.4.11.3
66744cytochrome oxidase+1.9.3.1
66744esterase (C 4)+
66744esterase Lipase (C 8)+
66744leucine aminopeptidase+3.4.1.1
66744leucine arylamidase+3.4.11.1
66744N-acetyl-beta-glucosaminidase+3.2.1.52
66744naphthol-AS-BI-phosphohydrolase+
66744trypsin+3.4.21.4
66744valine arylamidase+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
14922soil with plant residuesHungaryHUNEurope
66744soilHungaryHUNEurope

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants

Safety information

risk assessment

  • @ref: 14922
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

GC content

  • @ref: 66744
  • GC-content: 72
  • method: genome sequence analysis

External links

@ref: 14922

culture collection no.: DSM 53252, NCCB 100639, Soce 176

straininfo link

  • @ref: 81350
  • straininfo: 216302

literature

  • topic: Phylogeny
  • Pubmed-ID: 30234476
  • title: A polyphasic approach leads to seven new species of the cellulose-decomposing genus Sorangium, Sorangium ambruticinum sp. nov., Sorangium arenae sp. nov., Sorangium bulgaricum sp. nov., Sorangium dawidii sp. nov., Sorangium kenyense sp. nov., Sorangium orientale sp. nov. and Sorangium reichenbachii sp. nov.
  • authors: Mohr KI, Wolf C, Nubel U, Szafranska AK, Steglich M, Hennessen F, Gemperlein K, Kampfer P, Martin K, Muller R, Wink J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003034
  • year: 2018
  • mesh: Bacterial Typing Techniques, Cellulose/*metabolism, DNA, Bacterial/genetics, Genes, Bacterial, Myxococcales/*classification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
14922Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 53252)https://www.dsmz.de/collection/catalogue/details/culture/DSM-53252
18281Reichenbach, H.Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66744Kathrin I. Mohr, Corinna Wolf, Ulrich Nübel, Anna K. Szafranska, Matthias Steglich, Fabienne Hennessen, Katja Gemperlein, Peter Kaempfer, Karin Martin, Rolf Möller and Joachim Wink10.1099/ijsem.0.003034A polyphasic approach leads to seven new species of the cellulose-decomposing genus Sorangium, Sorangium ambruticinum sp. nov., Sorangium arenae sp. nov., Sorangium bulgaricum sp. nov., Sorangium dawidii sp. nov., Sorangium kenyense sp. nov., Sorangium orientale sp. nov. and Sorangium reichenbachii sp. nov.IJSEM 68: 3576-3586 201830234476
81350Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID216302.1StrainInfo: A central database for resolving microbial strain identifiers