Lederbergia galactosidilytica (DSM 15595, LMG 17892, MB800)

Name: Lederbergia galactosidilytica (DSM 15595, LMG 17892, MB800)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1212

Type strain

Strain Designation MB800

Culture col. no. DSM 15595 LMG 17892 MB800 CIP 108417

NCBI tax ID(s) 1255629 217031

Special Collections DSMZ Literature strains CIP

History <- M. Heyndrickx; MB800 <- H. Lieve, DVC-CLO, Belgium CIP <- 2004, DSMZ <- 1997, P. de Vos, Ghent Univ., Ghent, Belgium <- 1997, M. Heyndrickx, APQCA Res., Ghent, Belgium: strain MB800

Links

Lederbergia galactosidilytica MB800 is a facultative anaerobe, spore-forming, Gram-positive bacterium that forms irregular colonies and was isolated from raw milk.

spore-forming Gram-positive motile rod-shaped colony-forming facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 10694

LMG 17892,DSM 15595,CIP 108417

@ref 20215

Last LPSN update 2026-02-09 11:18:03

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Lederbergia

Species Lederbergia galactosidilytica

Full scientific name Lederbergia galactosidilytica corrig. (Heyndrickx et al. 2004) Gupta et al. 2020

Synonyms (2)

Bacillus galactosidilyticus
Lederbergia galactosidilyticus

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
23311	positive	2-5 µm	0.7-0.9 µm	rod-shaped
119504	positive			rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
23311	1 mm	creamy, off-white, opaque	irregular	2 days	TSA
119504

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5910	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
23311	Trypticase Soy Agar (TSA)
38177	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119504	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5910	positive	growth	30
23311	positive	growth	30
23311	positive	growth	40
23311	negative	growth	50
38177	positive	growth	30
119504	positive	growth	22-45
119504	negative	growth	10
119504	negative	growth	55

Culture pH

@ref	Ability	Type	PH	PH range
23311	positive	growth	6-10.5	alkaliphile
23311		growth	<5
119504	positive	growth	6

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
23311	facultative anaerobe
119504	obligate aerobe
125439	obligate aerobe	96.1

Spore formation

@ref	Spore description	Type of spore	Confidence
23311	ellipsoidal, central, paracentral, subterminal, slightly swollen sporangia	endospore
119504
125438			95.469

Halophily

@ref	Salt	Growth	Tested relation	Concentration
119504	NaCl	positive	growth	0-8 %
119504	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23311	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
23311	17426 ChEBI	5-dehydro-D-gluconate	-	builds acid from
23311	27613 ChEBI	amygdalin	+/-	builds acid from
23311	18305 ChEBI	arbutin	+	builds acid from
23311		casein	+/-	hydrolysis
23311	17057 ChEBI	cellobiose	+	builds acid from
23311	16947 ChEBI	citrate	-	assimilation
119504	16947 ChEBI	citrate	-	carbon source
23311	17108 ChEBI	D-arabinose	-	builds acid from
23311	18333 ChEBI	D-arabitol	-	builds acid from
23311	15824 ChEBI	D-fructose	+/-	builds acid from
23311	28847 ChEBI	D-fucose	-	builds acid from
23311	12936 ChEBI	D-galactose	+/-	builds acid from
23311	17634 ChEBI	D-glucose	+/-	builds acid from
23311	62318 ChEBI	D-lyxose	-	builds acid from
23311	16899 ChEBI	D-mannitol	+/-	builds acid from
23311	16024 ChEBI	D-mannose	+/-	builds acid from
23311	16988 ChEBI	D-ribose	+/-	builds acid from
23311	17924 ChEBI	D-sorbitol	-	builds acid from
23311	16443 ChEBI	D-tagatose	-	builds acid from
23311	16551 ChEBI	D-trehalose	+	builds acid from
23311	65327 ChEBI	D-xylose	+/-	builds acid from
23311	17113 ChEBI	erythritol	-	builds acid from
23311	4853 ChEBI	esculin	+	hydrolysis
119504	4853 ChEBI	esculin	+	hydrolysis
23311	16813 ChEBI	galactitol	-	builds acid from
23311	5291 ChEBI	gelatin	-	hydrolysis
23311	28066 ChEBI	gentiobiose	+/-	builds acid from
23311	24265 ChEBI	gluconate	-	builds acid from
23311	17754 ChEBI	glycerol	-	builds acid from
23311	28087 ChEBI	glycogen	-	builds acid from
119504	606565 ChEBI	hippurate	+	hydrolysis
23311	15443 ChEBI	inulin	+/-	builds acid from
23311	30849 ChEBI	L-arabinose	+/-	builds acid from
23311	18403 ChEBI	L-arabitol	-	builds acid from
23311	16467 ChEBI	L-arginine	-	assimilation
23311	18287 ChEBI	L-fucose	-	builds acid from
23311	18019 ChEBI	L-lysine	-	assimilation
23311	15729 ChEBI	L-ornithine	-	assimilation
23311	62345 ChEBI	L-rhamnose	+/-	builds acid from
23311	17266 ChEBI	L-sorbose	-	builds acid from
23311	65328 ChEBI	L-xylose	-	builds acid from
23311	17716 ChEBI	lactose	+/-	builds acid from
23311	17306 ChEBI	maltose	+/-	builds acid from
23311	6731 ChEBI	melezitose	+	builds acid from
23311	28053 ChEBI	melibiose	+	builds acid from
23311	320061 ChEBI	methyl alpha-D-glucopyranoside	+/-	builds acid from
23311	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
23311	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
23311	17268 ChEBI	myo-inositol	-	builds acid from
23311	506227 ChEBI	N-acetylglucosamine	+/-	builds acid from
23311	17632 ChEBI	nitrate	+	reduction
119504	17632 ChEBI	nitrate	+	reduction
119504	17632 ChEBI	nitrate	-	respiration
119504	16301 ChEBI	nitrite	-	reduction
23311	90144 ChEBI	O-nitrophenyl-beta-D-galactopyranosid	+	assimilation
23311	16634 ChEBI	raffinose	+	builds acid from
23311	15963 ChEBI	ribitol	-	builds acid from
23311	17814 ChEBI	salicin	+/-	builds acid from
23311	28017 ChEBI	starch	+	builds acid from
23311	17992 ChEBI	sucrose	+	builds acid from
23311	27897 ChEBI	tryptophan	-	energy source
23311	32528 ChEBI	turanose	+/-	builds acid from
23311	16199 ChEBI	urea	-	hydrolysis
23311	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite
23311	15688 ChEBI	acetoin
23311	16136 ChEBI	hydrogen sulfide
23311	35581 ChEBI	indole
119504	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
23311	15688 ChEBI	acetoin	-
119504	15688 ChEBI	acetoin	-
119504	17234 ChEBI	glucose		-
23311	35581 ChEBI	indole			-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
119504	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119504	amylase	-
68382	beta-galactosidase	+	3.2.1.23	from API zym
119504	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119504	caseinase	+	3.4.21.50
23311	catalase	+	1.11.1.6
119504	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
119504	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
119504	gamma-glutamyltransferase	-	2.3.2.2
119504	gelatinase	-
119504	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
119504	lipase	-
68382	lipase (C 14)	-		from API zym
119504	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
119504	ornithine decarboxylase	-	4.1.1.17
119504	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
23311	tryptophan deaminase	-	4.1.99.1
119504	tween esterase	-
23311	urease	+/-	3.5.1.5
23311	urease	-	3.5.1.5
119504	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	lipoate biosynthesis	100	5 of 5
66794	vitamin K metabolism	100	5 of 5
66794	sulfopterin metabolism	100	4 of 4
66794	starch degradation	100	10 of 10
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	aspartate and asparagine metabolism	100	9 of 9
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	photosynthesis	92.86	13 of 14
66794	vitamin B1 metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	degradation of sugar alcohols	87.5	14 of 16
66794	ketogluconate metabolism	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	pyrimidine metabolism	84.44	38 of 45
66794	glycogen metabolism	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	3-chlorocatechol degradation	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	purine metabolism	78.72	74 of 94
66794	heme metabolism	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	degradation of sugar acids	76	19 of 25
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	ppGpp biosynthesis	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	phenylalanine metabolism	69.23	9 of 13
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	degradation of hexoses	66.67	12 of 18
66794	cyanate degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	serine metabolism	66.67	6 of 9
66794	methionine metabolism	65.38	17 of 26
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	metabolism of disaccharids	63.64	7 of 11
66794	cholesterol biosynthesis	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	arginine metabolism	62.5	15 of 24
66794	alanine metabolism	62.07	18 of 29
66794	leucine metabolism	61.54	8 of 13
66794	urea cycle	61.54	8 of 13
66794	oxidative phosphorylation	61.54	56 of 91
66794	degradation of pentoses	60.71	17 of 28
66794	glycine betaine biosynthesis	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	histidine metabolism	58.62	17 of 29
66794	lipid metabolism	58.06	18 of 31
66794	non-pathway related	57.89	22 of 38
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	citric acid cycle	57.14	8 of 14
66794	lipid A biosynthesis	55.56	5 of 9
66794	tryptophan metabolism	52.63	20 of 38
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	suberin monomers biosynthesis	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	androgen and estrogen metabolism	50	8 of 16
66794	butanoate fermentation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	cysteine metabolism	50	9 of 18
66794	quinate degradation	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	sulfate reduction	46.15	6 of 13
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	proline metabolism	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	glutathione metabolism	42.86	6 of 14
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	mevalonate metabolism	42.86	3 of 7
66794	bile acid biosynthesis, neutral pathway	41.18	7 of 17
66794	ascorbate metabolism	40.91	9 of 22
66794	lysine metabolism	40.48	17 of 42
66794	arachidonate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	myo-inositol biosynthesis	40	4 of 10
66794	propionate fermentation	40	4 of 10
66794	hydrogen production	40	2 of 5
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	phenol degradation	35	7 of 20
66794	IAA biosynthesis	33.33	1 of 3
66794	polyamine pathway	30.43	7 of 23
66794	coenzyme M biosynthesis	30	3 of 10
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	tyrosine metabolism	28.57	4 of 14
66794	arachidonic acid metabolism	27.78	5 of 18
66794	ginsenoside metabolism	25	4 of 16
66794	cyclohexanol degradation	25	1 of 4
66794	vitamin B12 metabolism	23.53	8 of 34
66794	nitrate assimilation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119504	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119504	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Dairy product
#Environmental	#Microbial community	-
#Host Body Product	#Fluids	#Milk

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
5910	raw milk	Belgium	BEL	Europe
23311	aerobic sporeforming flora of raw milk
119504	Food, Raw milk after heat-treatement

Taxonmaps

69479

Global distribution of 16S sequence AJ535638 (>99% sequence identity) for Lederbergia galactosidilyticus subclade from Microbeatlas

Aquatic Samples	93
Soil Samples	412
Animal Samples	390
Plant Samples	82
Total Samples	977

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5910	1	Risk group (German classification) According to TRBA 466
119504	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1787356v1 assembly for Lederbergia galactosidilytica DSM 15595	contig	GCA_017873565	217031.9	2913365302	217031	66.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5910	Bacillus galactosidilyticus partial 16S rRNA gene, type strain LMG 17892T	AJ535638	1486		217031

GC content

@ref	GC-content (mol%)	Method
5910	37.7
23311	37.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lederbergia galactosidilytica DSM 15595
NCBI: GCA_017873565

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	88.70	no
125439	motility	BacteriaNetⓘ	yes	82.60	no
125439	gram_stain	BacteriaNetⓘ	variable	79.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lederbergia galactosidilyticus strain DSM 15595
PATRIC: 217031.9

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	77.90	no
125438	anaerobic	anaerobicⓘ	no	96.40	yes
125438	spore-forming	spore-formingⓘ	yes	95.47	yes
125438	thermophilic	thermophileⓘ	no	90.48	yes
125438	aerobic	aerobicⓘ	yes	56.63	no
125438	flagellated	motile2+ⓘ	yes	82.87	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus wuyishanensis sp. nov., isolated from rhizosphere soil of a medical plant, Prunella vulgaris.	Liu B, Liu GH, Sengonca C, Schumann P, Che JM, Zhu YJ, Wang JP	Int J Syst Evol Microbiol	10.1099/ijs.0.000215	2015
Phylogeny	Bacillus graminis sp. nov., an endophyte isolated from a coastal dune plant.	Bibi F, Chung EJ, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.023820-0	2010
Phylogeny	Bacillus galactosidilyticus sp. nov., an alkali-tolerant beta-galactosidase producer.	Heyndrickx M, Logan NA, Lebbe L, Rodriguez-Diaz M, Forsyth G, Goris J, Scheldeman P, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.02816-0	2004

References

#5910	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15595
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23311	Marc Heyndrickx, Niall A. Logan, Liesbeth Lebbe, Marina Rodríguez-Díaz, Gillian Forsyth, Johan Goris, Patsy Scheldeman, Paul De Vos: Bacillus galactosidilyticus sp. nov., an alkali-tolerant beta-galactosidase producer. IJSEM 54: 617 - 621 2004 ( DOI 10.1099/ijs.0.02816-0 , PubMed 15023985 )
#38177	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119504	Collection of Institut Pasteur ; Curators of the CIP; CIP 108417
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lederbergia galactosidilytica (DSM 15595, LMG 17892, MB800)

Name and taxonomic classification

Morphology

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Colony morphology

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Halophily

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Genome browser: GCA_017873565

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