Name: Kurthia zopfii F 64/100
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11954

Type strain:

Species: Kurthia zopfii

Strain Designation: F 64/100, EF 64/100

Culture col. no.: DSM 20580, ATCC 33403, NCIB 9878, NCTC 10597, CCUG 38890, JCM 6101, CIP 103249, LMG 17318, NBRC 101529, NCIMB 9878, VKM B-1568

Strain history: CIP <- 1988, NCIB <- 1966, T. Gibson <- E.M. Barns: strain EF 64/100

NCBI tax ID(s): 1650 (species)

SI-ID 13979

LMG 17318, ATCC 33403, DSM 20580, NCIMB 9878, NCTC 10597, NCIB 9878, CCUG 38890, CIP 103249, JCM 6101, VKM B-1568, BCRC 17018, CCRC 17018, NRRL B-41084, NBRC 101529

Special Collections

Other strains from Kurthia zopfii

Section

Kurthia zopfii F 64/100 is an aerobe, Gram-positive human pathogen of the family Caryophanaceae.

Gram-positive
aerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Kurthia*
	Species	**Kurthia zopfii**
	Full Scientific Name (LPSN)	Kurthia zopfii (Kurth 1883) Trevisan 1885 (Approved Lists 1980)

Synonym

"Bacterium zopfii"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8930]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #8930]

Culture medium growth

[Ref.: #8930]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8930]

Culture medium composition

expand / minimize

[Ref.: #41347]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #41347]

Culture medium growth

[Ref.: #41347]

Culture medium composition

expand / minimize

[Ref.: #124037]

Culture medium

CIP Medium 3

[Ref.: #124037]

Culture medium growth

[Ref.: #124037]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8930]	growth	30 °C
[Ref.: #41347]	growth	30 °C
[Ref.: #54532]	growth	30-37 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #54532]

Oxygen tolerance

aerobe

[Ref.: #8930]	Murein short key	A11.31
[Ref.: #8930]	Murein types	A4alpha L-Lys-D-Asp

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #54532]

Fatty acid	Percentage	ECL
C15:0 ISO	28.2	14.621
C15:0 ANTEISO	21.6	14.711
C14:0 ISO	17	13.618
C18:2 ω6,9c/C18:0 ANTE	6.5	17.724
C16:0	5.6	16
C18:1 ω9c	4.6	17.769
C16:0 iso	3.9	15.626
C14:0	3.2	14
C18:0	2.5	18
C16:1 ω11c	2.1	15.757
C15:0	1.6	15
C13:0 iso	0.9	12.612
C17:0 iso	0.7	16.629
C17:0 anteiso	0.6	16.722
Unidentified	0.5	13.927
C13:0 ANTEISO	0.4	12.701

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Turkey meat

[Ref.: #124037]	Sample type/isolated from	Animal, Turkey, cecum

[Ref.: #8930]	Country	Turkey
[Ref.: #8930]	Country ISO 3 Code	TUR
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence X70321 (>99% sequence identity) for Kurthia zopfii subclade from Microbeatlas

Aquatic Samples	206
Soil Samples	206
Animal Samples	1454
Plant Samples	91
Total Samples	1957

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8930]	Pathogenicity (human)	yes, in single cases
[Ref.: #8930]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #124037]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Kurthia zopfii 16S ribosomal RNA	M58800	1557	GenBank ENA	1650 tax ID	*
[Ref.: #20218]	Kurthia zopfii DSM:20580 16S ribosomal RNA gene, partial sequence	JN600480	1476	GenBank ENA	1650 tax ID	*
[Ref.: #20218]	Kurthia zopfii gene for 16S rRNA, partial sequence	AB271740	1479	GenBank ENA	1650 tax ID	*
[Ref.: #20218]	K.zopfii (NCIMB 9878) 16S rRNA	X70321	1457	GenBank ENA	1650 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kurthia zopfii ATCC 33403	GCA_003143955	contig	GenBank ENA	1650 tax ID
[Ref.: #67770]	Kurthia zopfii DSM 20580	GCA_004363595	scaffold	GenBank ENA	1650 tax ID
[Ref.: #66792]	Kurthia zopfii strain ATCC 33403	1650.5	wgs	PATRIC	1650 tax ID	*
[Ref.: #66792]	Kurthia zopfii strain DSM 20580	1650.9	wgs	PATRIC	1650 tax ID	*
[Ref.: #66792]	Kurthia zopfii strain NBRC 101529	1650.10	wgs	PATRIC	1650 tax ID	*
[Ref.: #66792]	Kurthia zopfii strain NCTC10597	1650.7	wgs	PATRIC	1650 tax ID	*

[Ref.: #67770]	GC-content	37.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	37.6 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kurthia zopfii DSM 20580 NCBI: GCA_004363595.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	72	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kurthia zopfii strain ATCC 33403 PATRIC: 1650.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	74.181	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.638	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	62.662	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	75.847	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	90.084	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	74.493	no

Availability in culture collections External links

[Ref.: #8930]

Culture collection no.

DSM 20580, ATCC 33403, NCIB 9878, NCTC 10597, CCUG 38890, JCM 6101, CIP 103249, LMG 17318, NBRC 101529, NCIMB 9878, VKM B-1568

[Ref.: #81167]

SI-ID 13979

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequence of Kurthia Type Species Kurthia zopfii Strain ATCC 33403(T).	Goen AE, MacLea KS	Microbiol Resour Announc	10.1128/MRA.00833-18	2018	*
Phylogeny	Kurthia ruminicola sp. nov., isolated from the rumen contents of a Holstein cow.	Kim MK, Kim ET, Kim SB, Jeong HY, Park BY, Srinivasan S	J Microbiol	10.1007/s12275-018-7285-2	2018	*
Phylogeny	Kurthia huakuii sp. nov., isolated from biogas slurry, and emended description of the genus Kurthia.	Ruan Z, Wang Y, Song J, Jiang S, Wang H, Li Y, Zhao B, Jiang R, Zhao B	Int J Syst Evol Microbiol	10.1099/ijs.0.056044-0	2013	*

References

#8930

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20580

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41347 ; Curators of the CIP;
#54532 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 38890

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81167

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13979.1 )

#124037 Collection of Institut Pasteur ; Curators of the CIP; CIP 103249
* These data were automatically processed and therefore are not curated

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Kurthia zopfii DSM 20580

Kurthia zopfii strain ATCC 33403

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