Name: Schlesneria paludicola DSM 18645
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11945

Type strain:

Species: Schlesneria paludicola

Culture col. no.: DSM 18645, MPL 7

Strain history: <- S. N. Dedysh, RAS, Moscow; MPL 7 <- I. S. Kulichevskaya, RAS, Moscow

NCBI tax ID(s): 1123242 (strain), 360056 (species)

SI-ID 404813

DSM 18645

Section

Schlesneria paludicola DSM 18645 is a facultative aerobe, mesophilic, motile bacterium that was isolated from sphagnum peat bog. Bakchar.

motile
ovoid-shaped
facultative aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Planctomycetales*
	Family	*Planctomycetaceae*
	Genus	*Schlesneria*
	Species	**Schlesneria paludicola**
	Full Scientific Name (LPSN)	Schlesneria paludicola Kulichevskaya et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.969

[Ref.: #32224]	Cell length	1.7 µm

[Ref.: #32224]	Cell width	1.05 µm

[Ref.: #32224]	Cell shape	ovoid-shaped

[Ref.: #32224]	Motility	yes

[Ref.: #32224]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7634]

Culture medium

SCHLESNERIA PALUDICOLA MEDIUM (DSMZ Medium 1244)

[Ref.: #7634]

Culture medium growth

[Ref.: #7634]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7634]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7634]	growth	25 °C
[Ref.: #32224]	growth	4-32 °C
[Ref.: #32224]	optimum	20.5 °C

[Ref.: #7634]	Temperature range	mesophilic
[Ref.: #32224]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #32224]			optimum	5.6
[Ref.: #32224]			growth	4.2-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32224]

Oxygen tolerance

facultative aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.98

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32224]		NaCl		growth	<0.5	%

[Ref.: #32224]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32224]	cellobiose ChEBI	+	carbon source
[Ref.: #32224]	fucose ChEBI	+	carbon source
[Ref.: #32224]	glucose ChEBI	+	carbon source
[Ref.: #32224]	lactose ChEBI	+	carbon source
[Ref.: #32224]	maltose ChEBI	+	carbon source
[Ref.: #32224]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32224]	nitrate ChEBI	+	reduction
[Ref.: #32224]	salicin ChEBI	+	carbon source
[Ref.: #32224]	sucrose ChEBI	+	carbon source
[Ref.: #32224]	trehalose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32224]	catalase	+	1.11.1.6
[Ref.: #32224]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32224]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7634]	Sample type/isolated from	sphagnum peat bog. Bakchar
[Ref.: #7634]	Geographic location (country and/or sea, region)	Tomsk Region
[Ref.: #7634]	Country	Russia
[Ref.: #7634]	Country ISO 3 Code	RUS
[Ref.: #7634]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Wetland (Swamp)
#Host	#Plants	#Peat moss

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM162407 (>99% sequence identity) for Schlesneria paludicola subclade from Microbeatlas

Aquatic Samples	593
Soil Samples	911
Animal Samples	87
Plant Samples	52
Total Samples	1643

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7634]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7634]	Schlesneria paludicola partial 16S rRNA gene, type strain MPL7T	AM162407	1446	ENA	360056 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Schlesneria paludicola DSM 18645 strain GE-03apr19-10	1123242.8	wgs	PATRIC	1123242 tax ID	*
[Ref.: #66792]	Schlesneria paludicola DSM 18645	1123242.3	wgs	PATRIC	1123242 tax ID	*
[Ref.: #66792]	Schlesneria paludicola DSM 18645	2548877001	draft	JGI IMG/M	1123242 tax ID	*
[Ref.: #66792]	Schlesneria paludicola DSM 18645 MH-08apr19-81	GCA_945862235	contig	GenBank	1123242 tax ID	*
[Ref.: #66792]	Schlesneria paludicola DSM 18645 GE-03apr19-10	GCA_945869955	contig	GenBank	1123242 tax ID	*
[Ref.: #66792]	Schlesneria paludicola DSM 18645 MsH-30jul19-291	GCA_945876035	contig	GenBank	1123242 tax ID	*

[Ref.: #32224]

GC-content

56.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Schlesneria paludicola DSM 18645 DSM 18645 NCBI: GCA_000255655.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Schlesneria paludicola DSM 18645 DSM 18645 NCBI: GCA_000255655.1
[Ref.: #69480]	motile	yes	86.551	yes
[Ref.: #69480]	flagellated	no	73.509	no
[Ref.: #69480]	gram-positive	no	98.079	no
[Ref.: #69480]	anaerobic	no	96.739	yes
[Ref.: #69480]	aerobic	yes	77.347	yes
[Ref.: #69480]	halophile	no	93.217	yes
[Ref.: #69480]	spore-forming	no	85.069	no
[Ref.: #69480]	glucose-util	yes	83.159	yes
[Ref.: #69480]	glucose-ferment	no	90.468	no
[Ref.: #69480]	thermophile	no	97.461	yes

Availability in culture collections External links

[Ref.: #7634]

Culture collection no.

DSM 18645, MPL 7

[Ref.: #81158]

SI-ID 404813

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequences of three species in the family Planctomycetaceae.	Guo M, Han X, Jin T, Zhou L, Yang J, Li Z, Chen J, Geng B, Zou Y, Wan D, Li D, Dai W, Wang H, Chen Y, Ni P, Fang C, Yang R	J Bacteriol	10.1128/JB.00639-12	2012	*
Phylogeny	Schlesneria paludicola gen. nov., sp. nov., the first acidophilic member of the order Planctomycetales, from Sphagnum-dominated boreal wetlands.	Kulichevskaya IS, Ivanova AO, Belova SE, Baulina OI, Bodelier PLE, Rijpstra WIC, Sinninghe Damste JS, Zavarzin GA, Dedysh SN	Int J Syst Evol Microbiol	10.1099/ijs.0.65157-0	2007	*

References

#7634

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18645

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32224

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28466 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81158

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404813.1 )

#28466

IJSEM 2680 2007 ( DOI 10.1099/ijs.0.65157-0 , PubMed 17978240 )

* These data were automatically processed and therefore are not curated

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Schlesneria paludicola DSM 18645 DSM 18645

Schlesneria paludicola DSM 18645 DSM 18645

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