Strain identifier

BacDive ID: 11945

Type strain: Yes

Species: Schlesneria paludicola

Strain history: <- S. N. Dedysh, RAS, Moscow; MPL 7 <- I. S. Kulichevskaya, RAS, Moscow

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7634

BacDive-ID: 11945

DSM-Number: 18645

keywords: genome sequence, 16S sequence, Bacteria, facultative aerobe, mesophilic, motile, ovoid-shaped

description: Schlesneria paludicola DSM 18645 is a facultative aerobe, mesophilic, motile bacterium that was isolated from sphagnum peat bog. Bakchar.

NCBI tax id

NCBI tax idMatching level
1123242strain
360056species

strain history

  • @ref: 7634
  • history: <- S. N. Dedysh, RAS, Moscow; MPL 7 <- I. S. Kulichevskaya, RAS, Moscow

doi: 10.13145/bacdive11945.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/planctomycetota
  • domain: Bacteria
  • phylum: Planctomycetota
  • class: Planctomycetia
  • order: Planctomycetales
  • family: Planctomycetaceae
  • genus: Schlesneria
  • species: Schlesneria paludicola
  • full scientific name: Schlesneria paludicola Kulichevskaya et al. 2007

@ref: 7634

domain: Bacteria

phylum: Planctomycetes

class: Planctomycetia

order: Planctomycetales

family: Planctomycetaceae

genus: Schlesneria

species: Schlesneria paludicola

full scientific name: Schlesneria paludicola Kulichevskaya et al. 2007

type strain: yes

Morphology

cell morphology

@refcell lengthcell widthcell shapemotilitygram stainconfidence
322241.7 µm1.05 µmovoid-shapedyes
69480negative99.969

pigmentation

  • @ref: 32224
  • production: no

Culture and growth conditions

culture medium

  • @ref: 7634
  • name: SCHLESNERIA PALUDICOLA MEDIUM (DSMZ Medium 1244)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1244
  • composition: Name: SCHLESNERIA PALUDICOLA MEDIUM (DSMZ Medium 1244) Composition: Agar 18.0 g/l N-Acetylglucosamine 1.0 g/l MgSO4 x 7 H2O 0.594 g/l Na-ampicillin 0.2 g/l Nitrilotriacetic acid 0.2 g/l Yeast extract 0.1 g/l Peptone 0.1 g/l KH2PO4 0.1 g/l CaCl2 x 2 H2O 0.0668 g/l ZnSO4 x 7 H2O 0.001095 g/l FeSO4 x 7 H2O 0.0005 g/l Na-EDTA 0.00025 g/l (NH4)6Mo7O24 x 4 H2O 0.000185 g/l MnSO4 x H2O 0.000154 g/l CuSO4 x 5 H2O 3.92e-05 g/l Co(NO3)2 x 6 H2O 2.48e-05 g/l Na2B4O7 x 10 H2O 1.77e-05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7634positivegrowth25mesophilic
32224positivegrowth4-32
32224positiveoptimum20.5psychrophilic

culture pH

@refabilitytypepH
32224positivegrowth4.2-7.5
32224positiveoptimum5.6

Physiology and metabolism

oxygen tolerance

  • @ref: 32224
  • oxygen tolerance: facultative aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.98

halophily

  • @ref: 32224
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <0.5 %

observation

  • @ref: 32224
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3222417057cellobiose+carbon source
3222433984fucose+carbon source
3222417234glucose+carbon source
3222417716lactose+carbon source
3222417306maltose+carbon source
32224506227N-acetylglucosamine+carbon source
3222417814salicin+carbon source
3222417992sucrose+carbon source
3222427082trehalose+carbon source
3222417632nitrate+reduction

enzymes

@refvalueactivityec
32224catalase+1.11.1.6
32224gelatinase+
32224cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 7634
  • sample type: sphagnum peat bog. Bakchar
  • geographic location: Tomsk Region
  • country: Russia
  • origin.country: RUS
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Wetland (Swamp)
#Host#Plants#Peat moss

taxonmaps

  • @ref: 69479
  • File name: preview.99_3594.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_412;96_1868;97_2245;98_2754;99_3594&stattab=map
  • Last taxonomy: Schlesneria paludicola subclade
  • 16S sequence: AM162407
  • Sequence Identity:
  • Total samples: 1643
  • soil counts: 911
  • aquatic counts: 593
  • animal counts: 87
  • plant counts: 52

Safety information

risk assessment

  • @ref: 7634
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7634
  • description: Schlesneria paludicola partial 16S rRNA gene, type strain MPL7T
  • accession: AM162407
  • length: 1446
  • database: ena
  • NCBI tax ID: 360056

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Schlesneria paludicola DSM 18645GCA_000255655scaffoldncbi1123242
66792Schlesneria paludicola DSM 186451123242.3wgspatric1123242
66792Schlesneria paludicola DSM 186452548877001draftimg1123242
66792Schlesneria paludicola DSM 18645 MH-08apr19-81GCA_945862235contigncbi1123242
66792Schlesneria paludicola DSM 18645 GE-03apr19-10GCA_945869955contigncbi1123242
66792Schlesneria paludicola DSM 18645 MsH-30jul19-291GCA_945876035contigncbi1123242
66792Schlesneria paludicola DSM 18645 MiH-16apr19-66GCA_945902765contigncbi1123242
66792Schlesneria paludicola DSM 18645 ZH-03apr19-85GCA_945908225contigncbi1123242
66792Schlesneria paludicola DSM 18645 strain ZH-03apr19-851123242.10wgspatric1123242
66792Schlesneria paludicola DSM 18645 strain MsH-30jul19-2911123242.9wgspatric1123242
66792Schlesneria paludicola DSM 18645 strain MH-08apr19-811123242.11wgspatric1123242
66792Schlesneria paludicola DSM 18645 strain GE-03apr19-101123242.8wgspatric1123242

GC content

  • @ref: 32224
  • GC-content: 56.3

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes86.551yes
flagellatedno73.509no
gram-positiveno98.079no
anaerobicno96.739yes
aerobicyes77.347yes
halophileno93.217yes
spore-formingno85.069no
glucose-utilyes83.159yes
glucose-fermentno90.468no
thermophileno97.461yes

External links

@ref: 7634

culture collection no.: DSM 18645, MPL 7

straininfo link

  • @ref: 81158
  • straininfo: 404813

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17978240Schlesneria paludicola gen. nov., sp. nov., the first acidophilic member of the order Planctomycetales, from Sphagnum-dominated boreal wetlands.Kulichevskaya IS, Ivanova AO, Belova SE, Baulina OI, Bodelier PLE, Rijpstra WIC, Sinninghe Damste JS, Zavarzin GA, Dedysh SNInt J Syst Evol Microbiol10.1099/ijs.0.65157-02007Bacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Species Specificity, *Sphagnopsida, *WetlandsGenetics
Genetics22740668Genome sequences of three species in the family Planctomycetaceae.Guo M, Han X, Jin T, Zhou L, Yang J, Li Z, Chen J, Geng B, Zou Y, Wan D, Li D, Dai W, Wang H, Chen Y, Ni P, Fang C, Yang RJ Bacteriol10.1128/JB.00639-122012Gene Expression Regulation, Bacterial/physiology, *Genome, Bacterial, Molecular Sequence Data, Planctomycetales/classification/*genetics, Species SpecificityPhylogeny

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7634Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18645)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18645
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32224Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2846628776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
81158Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID404813.1StrainInfo: A central database for resolving microbial strain identifiers