Name: Singulisphaera acidiphila MOB10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11943

Type strain:

Species: Singulisphaera acidiphila

Strain Designation: MOB10

Culture col. no.: DSM 18658, ATCC BAA-1392, VKM B-2454

Strain history: <- S. N. Dedysh, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; MOB10 <- I. S. Kulichevskaya

NCBI tax ID(s): 886293 (strain), 466153 (species)

SI-ID 354024

ATCC BAA-1392, DSM 18658, VKM B-2454

Section

Singulisphaera acidiphila MOB10 is a microaerophile, chemoorganotroph, mesophilic bacterium that was isolated from Sphagnum peat sampled from the bog Obukhovskoe .

coccus-shaped
chemoorganotroph
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Isosphaerales*
	Family	*Isosphaeraceae*
	Genus	*Singulisphaera*
	Species	**Singulisphaera acidiphila**
	Full Scientific Name (LPSN)	Singulisphaera acidiphila Kulichevskaya et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.704

[Ref.: #32505]	Cell width	2.1 µm
[Ref.: #28725]	Cell width	1.6-2.6 µm

[Ref.: #32505]	Cell shape	coccus-shaped

[Ref.: #32505]	Motility	no
[Ref.: #28725]	Motility	no

[Ref.: #28725]	Colony size	2-4 mm
[Ref.: #28725]	Colony color	opaque and colorless
[Ref.: #28725]	Cultivation medium used	Agar medium M13

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

[Ref.: #7641]

Caption:

Micrograph of DSM 18658.

[Ref.: #7641]

Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7641]

Culture medium

SINGULOSPHAERA MEDIUM (DSMZ Medium 1144)

[Ref.: #7641]

Culture medium growth

[Ref.: #7641]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7641]

Culture medium composition

expand / minimize

[Ref.: #28725]

Culture medium

Agar medium M13

[Ref.: #28725]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #7641]		growth	28 °C
[Ref.: #28725]	no	growth	35 °C
[Ref.: #32505]		growth	04-33 °C
[Ref.: #32505]		optimum	23 °C

[Ref.: #7641]	Temperature range	mesophilic
[Ref.: #28725]	Temperature range	mesophilic
[Ref.: #32505]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #32505]			optimum	5.6
[Ref.: #32505]			growth	4.2-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7641]	Oxygen tolerance	microaerophile
[Ref.: #7641]	Oxygen tolerance	aerobe
[Ref.: #32505]	Oxygen tolerance	microaerophile
[Ref.: #28725]	Oxygen tolerance	aerobe

[Ref.: #28725]

Nutrition type

chemoorganotroph

[Ref.: #69480]

Ability of spore formation

no Confidence in %93.799

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32505]		NaCl		growth	<0.5	%

[Ref.: #32505]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28725]	alanine ChEBI	-	assimilation
[Ref.: #28725]	alanine ChEBI	+	nitrogen source
[Ref.: #28725]	ammonia ChEBI	+	nitrogen source
[Ref.: #28725]	arginine ChEBI	-	assimilation
[Ref.: #28725]	arginine ChEBI	+	nitrogen source
[Ref.: #28725]	asparagine ChEBI	-	assimilation
[Ref.: #28725]	aspartate ChEBI	-	assimilation
[Ref.: #28725]	aspartate ChEBI	+	nitrogen source
[Ref.: #28725]	benzoate ChEBI	-	assimilation
[Ref.: #32505]	cellobiose ChEBI	+	carbon source
[Ref.: #28725]	cellobiose ChEBI	+	carbon source
[Ref.: #28725]	cellulose ChEBI	-	hydrolysis
[Ref.: #28725]	chitin ChEBI	-	hydrolysis
[Ref.: #28725]	chondroitin sulfate ChEBI	+	hydrolysis
[Ref.: #28725]	citrate ChEBI	-	assimilation
[Ref.: #28725]	cysteine ChEBI	-	assimilation
[Ref.: #28725]	cystine ChEBI	-	assimilation
[Ref.: #28725]	D-glucuronate ChEBI	-	assimilation
[Ref.: #28725]	decanoate ChEBI	-	assimilation
[Ref.: #32505]	esculin ChEBI	+	hydrolysis
[Ref.: #28725]	esculin ChEBI	+	hydrolysis
[Ref.: #28725]	ethanol ChEBI	-	assimilation
[Ref.: #28725]	formaldehyde ChEBI	-	assimilation
[Ref.: #28725]	formate ChEBI	-	assimilation
[Ref.: #32505]	fructose ChEBI	+	carbon source
[Ref.: #28725]	fructose ChEBI	+	carbon source
[Ref.: #28725]	fucose ChEBI	+	assimilation
[Ref.: #28725]	fumarate ChEBI	-	assimilation
[Ref.: #32505]	galactose ChEBI	+	carbon source
[Ref.: #28725]	galactose ChEBI	+	carbon source
[Ref.: #28725]	gelatin ChEBI	+	hydrolysis
[Ref.: #32505]	glucose ChEBI	+	carbon source
[Ref.: #28725]	glucose ChEBI	+	carbon source
[Ref.: #28725]	glutamine ChEBI	-	assimilation
[Ref.: #28725]	glutamine ChEBI	+	nitrogen source
[Ref.: #28725]	glutaric acid ChEBI	-	assimilation
[Ref.: #28725]	glycerol ChEBI	-	assimilation
[Ref.: #28725]	glycine ChEBI	-	assimilation
[Ref.: #28725]	glycine ChEBI	+	nitrogen source
[Ref.: #28725]	histidine ChEBI	-	assimilation
[Ref.: #28725]	isoleucine ChEBI	-	assimilation
[Ref.: #28725]	lactate ChEBI	+	assimilation
[Ref.: #32505]	lactose ChEBI	+	carbon source
[Ref.: #28725]	lactose ChEBI	+	carbon source
[Ref.: #28725]	laminarin ChEBI	+	hydrolysis
[Ref.: #28725]	leucine ChEBI	-	assimilation
[Ref.: #28725]	leucrose ChEBI	+	carbon source
[Ref.: #28725]	lichenin ChEBI	+	hydrolysis
[Ref.: #28725]	lysine ChEBI	-	assimilation
[Ref.: #28725]	malate ChEBI	-	assimilation
[Ref.: #32505]	maltose ChEBI	+	carbon source
[Ref.: #28725]	maltose ChEBI	+	carbon source
[Ref.: #28725]	mannitol ChEBI	-	assimilation
[Ref.: #32505]	mannose ChEBI	+	carbon source
[Ref.: #28725]	mannose ChEBI	+	carbon source
[Ref.: #28725]	melezitose ChEBI	-	assimilation
[Ref.: #32505]	melibiose ChEBI	+	carbon source
[Ref.: #28725]	melibiose ChEBI	+	carbon source
[Ref.: #28725]	methanol ChEBI	-	assimilation
[Ref.: #28725]	methionine ChEBI	-	assimilation
[Ref.: #28725]	N-acetylgalactosamine ChEBI	+	nitrogen source
[Ref.: #32505]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #28725]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #28725]	nitrate ChEBI	-	assimilation
[Ref.: #28725]	nitrite ChEBI	-	assimilation
[Ref.: #28725]	norleucine ChEBI	-	assimilation
[Ref.: #28725]	ornithine ChEBI	-	assimilation
[Ref.: #28725]	pectin ChEBI	+	hydrolysis
[Ref.: #28725]	phenylalanine ChEBI	-	assimilation
[Ref.: #28725]	proline ChEBI	-	assimilation
[Ref.: #28725]	propionate ChEBI	-	assimilation
[Ref.: #28725]	pullulan ChEBI	+	hydrolysis
[Ref.: #28725]	pyruvate ChEBI	+	assimilation
[Ref.: #28725]	raffinose ChEBI	-	assimilation
[Ref.: #32505]	rhamnose ChEBI	+	carbon source
[Ref.: #28725]	rhamnose ChEBI	+	carbon source
[Ref.: #32505]	ribose ChEBI	+	carbon source
[Ref.: #28725]	ribose ChEBI	+	carbon source
[Ref.: #32505]	salicin ChEBI	+	carbon source
[Ref.: #28725]	salicin ChEBI	+	carbon source
[Ref.: #28725]	serine ChEBI	-	assimilation
[Ref.: #28725]	sorbose ChEBI	-	assimilation
[Ref.: #28725]	starch ChEBI	-	assimilation
[Ref.: #28725]	starch ChEBI	-	hydrolysis
[Ref.: #28725]	succinate ChEBI	-	assimilation
[Ref.: #32505]	sucrose ChEBI	+	carbon source
[Ref.: #28725]	sucrose ChEBI	+	carbon source
[Ref.: #28725]	tartrate ChEBI	-	assimilation
[Ref.: #28725]	threonine ChEBI	-	assimilation
[Ref.: #28725]	threonine ChEBI	+	nitrogen source
[Ref.: #32505]	trehalose ChEBI	+	carbon source
[Ref.: #28725]	trehalose ChEBI	+	carbon source
[Ref.: #28725]	tryptophan ChEBI	-	assimilation
[Ref.: #28725]	tryptophan ChEBI	+	nitrogen source
[Ref.: #28725]	tyrosine ChEBI	-	assimilation
[Ref.: #28725]	valine ChEBI	-	assimilation
[Ref.: #28725]	xylan ChEBI	+	hydrolysis
[Ref.: #32505]	xylose ChEBI	+	carbon source
[Ref.: #28725]	xylose ChEBI	+	carbon source
[Ref.: #28725]	yeast extract	+	nitrogen source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #28725]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #28725]	chloramphenicol ChEBI				yes	30	µg (disc)
[Ref.: #28725]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #28725]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #28725]	lincomycin ChEBI				yes	10	µg (disc)
[Ref.: #28725]	neomycin ChEBI	yes	10	µg (disc)
[Ref.: #28725]	novobiocin ChEBI				yes	30	µg (disc)
[Ref.: #28725]	streptomycin ChEBI				yes	10	µg (disc)

	Enzyme	Enzyme activity	EC number
[Ref.: #32505]	acid phosphatase	+	3.1.3.2
[Ref.: #28725]	acid phosphatase	+	3.1.3.2
[Ref.: #32505]	alkaline phosphatase	+	3.1.3.1
[Ref.: #28725]	alkaline phosphatase	+	3.1.3.1
[Ref.: #28725]	beta-galactosidase	+	3.2.1.23
[Ref.: #32505]	catalase	+	1.11.1.6
[Ref.: #28725]	cystine arylamidase	+	3.4.11.3
[Ref.: #32505]	cytochrome oxidase	+	1.9.3.1
[Ref.: #28725]	esterase	+
[Ref.: #28725]	esterase Lipase (C 8)	+
[Ref.: #32505]	gelatinase	+
[Ref.: #28725]	leucine arylamidase	+	3.4.11.1
[Ref.: #28725]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #28725]	phosphohydrolase	+
[Ref.: #32505]	urease	+	3.5.1.5
[Ref.: #28725]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	quinate degradation	100	2 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	3-chlorocatechol degradation	100	5 of 5
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	acetoin degradation	100	3 of 3
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	chorismate metabolism	100	9 of 9
[Ref.: #66794]	degradation of hexoses	94.44	17 of 18
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	methanofuran biosynthesis	80	4 of 5
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	tyrosine metabolism	78.57	11 of 14
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	degradation of pentoses	78.57	22 of 28
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	nitrate assimilation	77.78	7 of 9
[Ref.: #66794]	purine metabolism	77.66	73 of 94
[Ref.: #66794]	vitamin B12 metabolism	76.47	26 of 34
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	lysine metabolism	76.19	32 of 42
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	methionine metabolism	73.08	19 of 26
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	degradation of sugar acids	72	18 of 25
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	tryptophan metabolism	71.05	27 of 38
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	69.23	9 of 13
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	pyrimidine metabolism	66.67	30 of 45
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	flavin biosynthesis	66.67	10 of 15
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	66.67	4 of 6
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	arginine metabolism	62.5	15 of 24
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	vitamin B1 metabolism	61.54	8 of 13
[Ref.: #66794]	sulfate reduction	61.54	8 of 13
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	oxidative phosphorylation	61.54	56 of 91
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	phenol degradation	60	12 of 20
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	60	9 of 15
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	non-pathway related	57.89	22 of 38
[Ref.: #66794]	citric acid cycle	57.14	8 of 14
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	methanogenesis from CO2	50	6 of 12
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	grixazone biosynthesis	50	1 of 2
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	cysteine metabolism	50	9 of 18
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	carotenoid biosynthesis	50	11 of 22
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	sphingosine metabolism	50	3 of 6
[Ref.: #66794]	polyamine pathway	47.83	11 of 23
[Ref.: #66794]	3-phenylpropionate degradation	46.67	7 of 15
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	allantoin degradation	44.44	4 of 9
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	cholesterol biosynthesis	36.36	4 of 11
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	daunorubicin biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7641]	Sample type/isolated from	Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland)
[Ref.: #7641]	Host species	Sphagnum
[Ref.: #7641]	Geographic location (country and/or sea, region)	northern European Russia, Yaroslavl region (58° 14' N 38° 12' E)
[Ref.: #7641]	Country	Russia
[Ref.: #7641]	Country ISO 3 Code	RUS
[Ref.: #7641]	Continent	Europe
[Ref.: #7641]	Geographic location	58.2333°/38.2000°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Wetland (Swamp)
#Host	#Plants	#Peat moss

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM850678 (>99% sequence identity) for Singulisphaera acidiphila subclade from Microbeatlas

Aquatic Samples	24
Soil Samples	1314
Animal Samples	77
Plant Samples	137
Total Samples	1552

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7641]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7641]	Singulisphaera acidiphila partial 16S rRNA gene, type strain ATCC BAA-1392	AM850678	1425	ENA	886293 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Singulisphaera acidiphila MOB10, DSM 18658	2509601004	complete	JGI IMG/M	886293 tax ID	*
[Ref.: #66792]	Singulisphaera acidiphila DSM 18658	GCA_000255675	scaffold	GenBank	886293 tax ID	*
[Ref.: #66792]	Singulisphaera acidiphila DSM 18658	886293.4	wgs	PATRIC	886293 tax ID	*
[Ref.: #66792]	Singulisphaera acidiphila DSM 18658	886293.21	plasmid	PATRIC	886293 tax ID	*
[Ref.: #66792]	Singulisphaera acidiphila DSM 18658	886293.22	plasmid	PATRIC	886293 tax ID	*
[Ref.: #66792]	Singulisphaera acidiphila DSM 18658	886293.24	wgs	PATRIC	886293 tax ID	*

[Ref.: #32505]	GC-content	59.9 mol%
[Ref.: #28725]	GC-content	59.9 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #7641]	GC-content	62 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Singulisphaera acidiphila DSM 18658 DSM 18658 NCBI: GCA_000242455.3
[Ref.: #69481]	spore-forming	yes	70	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Singulisphaera acidiphila DSM 18658 DSM 18658 NCBI: GCA_000242455.3
[Ref.: #69480]	motile	no	76.732	yes
[Ref.: #69480]	flagellated	no	89.798	no
[Ref.: #69480]	gram-positive	no	95.313	no
[Ref.: #69480]	anaerobic	no	98.144	yes
[Ref.: #69480]	aerobic	yes	86.957	no
[Ref.: #69480]	halophile	no	96.19	yes
[Ref.: #69480]	spore-forming	no	75.042	no
[Ref.: #69480]	thermophile	no	98.692	yes
[Ref.: #69480]	glucose-util	yes	87.447	yes
[Ref.: #69480]	glucose-ferment	no	85.721	no

Availability in culture collections External links

[Ref.: #7641]

Culture collection no.

DSM 18658, ATCC BAA-1392, VKM B-2454

[Ref.: #81156]

SI-ID 354024

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative Genomics of Four Isosphaeraceae Planctomycetes: A Common Pool of Plasmids and Glycoside Hydrolase Genes Shared by Paludisphaera borealis PX4(T), Isosphaera pallida IS1B(T), Singulisphaera acidiphila DSM 18658(T), and Strain SH-PL62.	Ivanova AA, Naumoff DG, Miroshnikov KK, Liesack W, Dedysh SN	Front Microbiol	10.3389/fmicb.2017.00412	2017	*
Genetics	Genome sequences of three species in the family Planctomycetaceae.	Guo M, Han X, Jin T, Zhou L, Yang J, Li Z, Chen J, Geng B, Zou Y, Wan D, Li D, Dai W, Wang H, Chen Y, Ni P, Fang C, Yang R	J Bacteriol	10.1128/JB.00639-12	2012	*
Phylogeny	Singulisphaera acidiphila gen. nov., sp. nov., a non-filamentous, Isosphaera-like planctomycete from acidic northern wetlands.	Kulichevskaya IS, Ivanova AO, Baulina OI, Bodelier PL, Damste JS, Dedysh SN	Int J Syst Evol Microbiol	10.1099/ijs.0.65593-0	2008	*

References

#7641

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18658

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28725

IJSEM 1186 2008 ( DOI 10.1099/ijs.0.65593-0 , PubMed 18450711 )

#32505

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28725 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81156

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID354024.1 )

#28725

IJSEM 1186 2008 ( DOI 10.1099/ijs.0.65593-0 , PubMed 18450711 )

* These data were automatically processed and therefore are not curated

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Singulisphaera acidiphila DSM 18658 DSM 18658

Singulisphaera acidiphila DSM 18658 DSM 18658

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