Name: Rhodopirellula baltica SH 1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11942

Type strain:

Species: Rhodopirellula baltica

Strain Designation: SH 1

Culture col. no.: DSM 10527, NCIMB 13988, IFAM 1310

Strain history: <- H. Schlesner; SH 1

NCBI tax ID(s): 265606 (species)

Other strains from Rhodopirellula baltica

R. baltica SH28, DSM 24038, IFAM 1430, JCM ...
R. baltica SWK14, DSM 24080, JCM 17622
R. baltica WH47, DSM 24081, JCM 17624
R. baltica 3ILRT, DSM 25515
R. baltica 4ILRT, DSM 25516
R. baltica 5ILRT, DSM 25517
R. baltica 2ILRT, DSM 25548

Section

Rhodopirellula baltica SH 1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from brackish water.

Gram-negative
ovoid-shaped
aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Pirellulales*
	Family	*Pirellulaceae*
	Genus	*Rhodopirellula*
	Species	**Rhodopirellula baltica**
	Full Scientific Name (PNU)	Rhodopirellula baltica Schlesner et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #31241]	Gram stain	negative
[Ref.: #31241]	Cell length	1.75 µm
[Ref.: #31241]	Cell width	1.75 µm
[Ref.: #31241]	Cell shape	ovoid-shaped
[Ref.: #31241]	Motility	no

[Ref.: #31241]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3965]

Culture medium

M13a (PIRELLULA) MEDIUM (DSMZ Medium 600a)

[Ref.: #3965]

Culture medium growth

[Ref.: #3965]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #3965]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #3965]	growth	25 °C
[Ref.: #31241]	growth	28-32 °C
[Ref.: #31241]	optimum	28-30 °C

[Ref.: #3965]	Temperature range	mesophilic
[Ref.: #31241]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31241]

Oxygen tolerance

aerobe

[Ref.: #31241]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31241]	cellobiose ChEBI	+	carbon source
[Ref.: #31241]	dextrin ChEBI	+	carbon source
[Ref.: #31241]	esculin ChEBI	+	hydrolysis
[Ref.: #31241]	fructose ChEBI	+	carbon source
[Ref.: #31241]	galactose ChEBI	+	carbon source
[Ref.: #31241]	gluconate ChEBI	+	carbon source
[Ref.: #31241]	glucose ChEBI	+	carbon source
[Ref.: #31241]	glycerol ChEBI	+	carbon source
[Ref.: #31241]	lactose ChEBI	+	carbon source
[Ref.: #31241]	maltose ChEBI	+	carbon source
[Ref.: #31241]	mannose ChEBI	+	carbon source
[Ref.: #31241]	melibiose ChEBI	+	carbon source
[Ref.: #31241]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31241]	raffinose ChEBI	+	carbon source
[Ref.: #31241]	rhamnose ChEBI	+	carbon source
[Ref.: #31241]	ribose ChEBI	+	carbon source
[Ref.: #31241]	salicin ChEBI	+	carbon source
[Ref.: #31241]	sucrose ChEBI	+	carbon source
[Ref.: #31241]	trehalose ChEBI	+	carbon source
[Ref.: #31241]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #31241]		hydrogen sulfide ChEBI

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31241]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3965]	Sample type/isolated from	brackish water
[Ref.: #3965]	Geographic location (country and/or sea, region)	Baltic Sea (Kiel Fjord)
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Brackish

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3965]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodopirellula baltica SH 1	243090.15	complete	PATRIC	243090 tax ID	*
[Ref.: #66792]	Klebsiella pneumoniae 16B124	GCA_021416065	scaffold	PATRIC	573 tax ID	*

[Ref.: #3965]

GC-content

55 mol%

Availability in culture collections External links

[Ref.: #3965]

Culture collection no.

DSM 10527, NCIMB 13988, IFAM 1310

[Ref.: #20218]

Associated Passport(s) in StrainInfo

381521, 381523

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Evaluation of the phylogenetic position of the planctomycete 'Rhodopirellula baltica' SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees.	Teeling H, Lombardot T, Bauer M, Ludwig W, Glockner FO	Int J Syst Evol Microbiol	10.1099/ijs.0.02913-0	2004	*
Phylogeny	Taxonomic heterogeneity within the Planctomycetales as derived by DNA-DNA hybridization, description of Rhodopirellula baltica gen. nov., sp. nov., transfer of Pirellula marina to the genus Blastopirellula gen. nov. as Blastopirellula marina comb. nov. and emended description of the genus Pirellula.	Schlesner H, Rensmann C, Tindall BJ, Gade D, Rabus R, Pfeiffer S, Hirsch P	Int J Syst Evol Microbiol	10.1099/ijs.0.63113-0	2004	*
Phylogeny	The transcriptional regulator pool of the marine bacterium Rhodopirellula baltica SH 1T as revealed by whole genome comparisons.	Lombardot T, Bauer M, Teeling H, Amann R, Glockner FO	FEMS Microbiol Lett	10.1016/j.femsle.2004.10.049	2005	*
Biotechnology	Biocatalytic approaches for the quantitative production of single stereoisomers from racemates.	Gadler P, Glueck SM, Kroutil W, Nestl BM, Larissegger-Schnell B, Ueberbacher BT, Wallner SR, Faber K	Biochem Soc Trans	10.1042/BST20060296	2006	*
Metabolism	Life cycle analysis of the model organism Rhodopirellula baltica SH 1(T) by transcriptome studies.	Wecker P, Klockow C, Schuler M, Dabin J, Michel G, Glockner FO	Microb Biotechnol	10.1111/j.1751-7915.2010.00183.x	2010	*
Enzymology	Homology Modeling and Probable Active Site Cavity Prediction of Uncharacterized Arsenate Reductase in Bacterial spp.	Rahman MS, Hossain MS, Saha SK, Rahman S, Sonne C, Kim KH	Appl Biochem Biotechnol	10.1007/s12010-020-03392-w	2020	*
	Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for the identification of environmental organisms: the Planctomycetes paradigm.	Cayrou C, Raoult D, Drancourt M	Environ Microbiol Rep	10.1111/j.1758-2229.2010.00176.x	2010	*
	Developing Techniques for the Utilization of Planctomycetes As Producers of Bioactive Molecules.	Jeske O, Surup F, Ketteniss M, Rast P, Forster B, Jogler M, Wink J, Jogler C	Front Microbiol	10.3389/fmicb.2016.01242	2016	*

References

#3965

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10527

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31241

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27565 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#27565

IJSEM 1567 2004 ( DOI 10.1099/ijs.0.63113-0 , PubMed 15388712 )

* These data were automatically processed and therefore are not curated

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