Name: Thiomicrospira thyasirae TG2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11915

Type strain:

Species: Thiomicrospira thyasirae

Strain Designation: TG2

Culture col. no.: DSM 5322, ATCC 51452

Strain history: <- A.P. Wood, TG2

NCBI tax ID(s): 932 (species)

SI-ID 42992

ATCC 51452, DSM 5322

Special Collections

DSMZ

Section

Thiomicrospira thyasirae TG2 is a bacterium that was isolated from gills of Thyasira flexuosa.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Piscirickettsiaceae*
	Genus	*Thiomicrospira*
	Species	**Thiomicrospira thyasirae**
	Full Scientific Name (LPSN)	Thiomicrospira thyasirae (Wood and Kelly 1995) Wood and Kelly 1995

Synonym

Thiobacillus thyasiris

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1989]

Culture medium

THIOMICROSPIRA THYASIRAE MEDIUM (DSMZ Medium 484)

[Ref.: #1989]

Culture medium growth

[Ref.: #1989]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1989]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1989]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1989]	Sample type/isolated from	gills of Thyasira flexuosa
[Ref.: #1989]	Host species	Thyasira flexuosa
[Ref.: #1989]	Geographic location (country and/or sea, region)	Devon, Plymouth Sound
[Ref.: #1989]	Country	United Kingdom
[Ref.: #1989]	Country ISO 3 Code	GBR
[Ref.: #1989]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Mollusca
#Host Body-Site	#Organ	#Vascular system

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF016046 (>99% sequence identity) for Thiomicrospira from Microbeatlas

Aquatic Samples	210
Soil Samples	20
Animal Samples	13
Plant Samples	1
Total Samples	244

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1989]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1989]	Thiomicrospira thyasirae 16S ribosomal RNA gene, partial sequence	AF016046	1424	GenBank ENA	932 tax ID
[Ref.: #20218]	Thiobacillus thyasiris partial 16S ribosomal RNA	L01478	461	GenBank ENA	932 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thiomicrospira thyasirae DSM 5322	2788499856	draft	JGI IMG/M	932 tax ID	*

[Ref.: #1989]

GC-content

52.0 mol%

Availability in culture collections External links

[Ref.: #1989]

Culture collection no.

DSM 5322, ATCC 51452

[Ref.: #81129]

SI-ID 42992

References

#1989

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5322

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81129

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42992.1 )

* These data were automatically processed and therefore are not curated

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