Name: Thiomicrospira thyasirae TG2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11915

Type strain:

Species: Thiomicrospira thyasirae

Strain Designation: TG2

Culture col. no.: DSM 5322, ATCC 51452

Strain history: <- A.P. Wood, TG2

NCBI tax ID(s): 932 (species)

SI-ID 42992

ATCC 51452, DSM 5322

Section

Thiomicrospira thyasirae TG2 is a mesophilic bacterium that was isolated from gills of Thyasira flexuosa.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Piscirickettsiaceae*
	Genus	*Thiomicrospira*
	Species	**Thiomicrospira thyasirae**
	Full Scientific Name (LPSN)	Thiomicrospira thyasirae (Wood and Kelly 1995) Wood and Kelly 1995

Synonym

Thiobacillus thyasiris

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1989]

Culture medium

THIOMICROSPIRA THYASIRAE MEDIUM (DSMZ Medium 484)

[Ref.: #1989]

Culture medium growth

[Ref.: #1989]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1989]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1989]			growth	30 °C

[Ref.: #1989]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1989]	Sample type/isolated from	gills of Thyasira flexuosa
[Ref.: #1989]	Host species	Thyasira flexuosa
[Ref.: #1989]	Geographic location (country and/or sea, region)	Devon, Plymouth Sound
[Ref.: #1989]	Country	United Kingdom
[Ref.: #1989]	Country ISO 3 Code	GBR
[Ref.: #1989]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Mollusca
#Host Body-Site	#Organ	#Vascular system

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF016046 (>99% sequence identity) for Thiomicrospira from Microbeatlas

Aquatic Samples	210
Soil Samples	20
Animal Samples	13
Plant Samples	1
Total Samples	244

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1989]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1989]	Thiomicrospira thyasirae 16S ribosomal RNA gene, partial sequence	AF016046	1424	ENA	932 tax ID
[Ref.: #20218]	Thiobacillus thyasiris partial 16S ribosomal RNA	L01478	461	ENA	932 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thiomicrospira thyasirae DSM 5322	2788499856	draft	JGI IMG/M	932 tax ID	*

[Ref.: #1989]

GC-content

52.0 mol%

Availability in culture collections External links

[Ref.: #1989]

Culture collection no.

DSM 5322, ATCC 51452

[Ref.: #81129]

SI-ID 42992

References

#1989

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5322

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81129

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42992.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Thiomicrospira thyasirae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF