Strain identifier

BacDive ID: 11915

Type strain: Yes

Species: Thiomicrospira thyasirae

Strain Designation: TG2

Strain history: <- A.P. Wood, TG2

NCBI tax ID(s): 932 (species)

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General

@ref: 1989

BacDive-ID: 11915

DSM-Number: 5322

keywords: genome sequence, 16S sequence, Bacteria

description: Thiomicrospira thyasirae TG2 is a bacterium that was isolated from gills of Thyasira flexuosa.

NCBI tax id

  • NCBI tax id: 932
  • Matching level: species

strain history

  • @ref: 1989
  • history: <- A.P. Wood, TG2

doi: 10.13145/bacdive11915.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Beggiatoales
  • family: Piscirickettsiaceae
  • genus: Thiomicrospira
  • species: Thiomicrospira thyasirae
  • full scientific name: Thiomicrospira thyasirae (Wood and Kelly 1995) Wood and Kelly 1995

  • synonyms

    • @ref: 20215
    • synonym: Thiobacillus thyasiris

@ref: 1989

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Thiotrichales

family: Piscirickettsiaceae

genus: Thiomicrospira

species: Thiomicrospira thyasirae

full scientific name: Thiomicrospira thyasirae (Wood and Kelly 1995) Wood and Kelly 1995 emend. Boden et al. 2017

strain designation: TG2

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1989
  • name: THIOMICROSPIRA THYASIRAE MEDIUM (DSMZ Medium 484)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/484
  • composition: Name: THIOMICROSPIRA THYASIRAE MEDIUM (DSMZ Medium 484) Composition: NaCl 25.0 g/l Agar 15.0 g/l Na2HPO4 x 2 H2O 7.9 g/l Na2S2O3 x 5 H2O 5.0 g/l KH2PO4 1.5 g/l Na2-EDTA 0.5 g/l NH4Cl 0.4 g/l NaOH 0.11 g/l ZnSO4 x 7 H2O 0.11 g/l MgSO4 x 7 H2O 0.0999999 g/l CaCl2 x 2 H2O 0.0734 g/l FeSO4 x 7 H2O 0.05 g/l MnCl2 x 4 H2O 0.025 g/l (NH4)6Mo7O24 x 4 H2O 0.005 g/l CoCl2 x 6 H2O 0.005 g/l CuSO4 x 5 H2O 0.002 g/l Riboflavin 0.0002 g/l Calcium pantothenate 0.0002 g/l Pyridoxine hydrochloride 0.0002 g/l Nicotinic acid 0.0002 g/l p-Aminobenzoic acid 0.0001 g/l Thiamine-HCl x 2 H2O 0.0001 g/l Biotin 1e-05 g/l Vitamin B12 1e-05 g/l Distilled water

culture temp

  • @ref: 1989
  • growth: positive
  • type: growth
  • temperature: 30

Isolation, sampling and environmental information

isolation

  • @ref: 1989
  • sample type: gills of Thyasira flexuosa
  • host species: Thyasira flexuosa
  • geographic location: Devon, Plymouth Sound
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Invertebrates (Other)#Mollusca
#Host Body-Site#Organ#Vascular system

taxonmaps

  • @ref: 69479
  • File name: preview.99_4695.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_118;96_1357;97_1611;98_3520;99_4695&stattab=map
  • Last taxonomy: Thiomicrospira
  • 16S sequence: AF016046
  • Sequence Identity:
  • Total samples: 244
  • soil counts: 20
  • aquatic counts: 210
  • animal counts: 13
  • plant counts: 1

Safety information

risk assessment

  • @ref: 1989
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Thiobacillus thyasiris partial 16S ribosomal RNAL01478461nuccore932
1989Thiomicrospira thyasirae 16S ribosomal RNA gene, partial sequenceAF0160461424nuccore932

Genome sequences

  • @ref: 66792
  • description: Thiomicrospira thyasirae DSM 5322
  • accession: 2788499856
  • assembly level: draft
  • database: img
  • NCBI tax ID: 932

GC content

  • @ref: 1989
  • GC-content: 52.0

External links

@ref: 1989

culture collection no.: DSM 5322, ATCC 51452

straininfo link

  • @ref: 81129
  • straininfo: 42992

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1989Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5322)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5322
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81129Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42992.1StrainInfo: A central database for resolving microbial strain identifiers