Name: Methylophaga alcalica M39
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11906

Type strain:

Species: Methylophaga alcalica

Strain Designation: M39

Culture col. no.: DSM 14953, ATCC BAA-297, VKM B-2251

Strain history: <- Y. A. Trotsenko; M39 <- N. V. Doronina

NCBI tax ID(s): 182774 (species)

SI-ID 100768

ATCC BAA-297, VKM B-2251, DSM 14953

Section

Methylophaga alcalica M39 is a mesophilic bacterium that was isolated from saline soda lake Khotontyn-nur.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Piscirickettsiaceae*
	Genus	*Methylophaga*
	Species	**Methylophaga alcalica**
	Full Scientific Name (LPSN)	Methylophaga alcalica Doronina et al. 2003

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5616]

Culture medium

METHYLOPHAGA ALCALICA MEDIUM (DSMZ Medium 976)

[Ref.: #5616]

Culture medium growth

[Ref.: #5616]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5616]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5616]			growth	30 °C

[Ref.: #5616]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5616]	Sample type/isolated from	saline soda lake Khotontyn-nur
[Ref.: #5616]	Country	Mongolia
[Ref.: #5616]	Country ISO 3 Code	MNG
[Ref.: #5616]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Alkaline	-
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5616]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Methylophaga alcalica 16S ribosomal RNA gene, partial sequence	AF384373	1494	ENA	182774 tax ID	*

[Ref.: #5616]

GC-content

48.3 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #5616]

Culture collection no.

DSM 14953, ATCC BAA-297, VKM B-2251

[Ref.: #81121]

SI-ID 100768

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methylophaga lonarensis sp. nov., a moderately haloalkaliphilic methylotroph isolated from the soda lake sediments of a meteorite impact crater.	Antony CP, Doronina NV, Boden R, Trotsenko YA, Shouche YS, Murrell JC	Int J Syst Evol Microbiol	10.1099/ijs.0.035089-0	2011	*
Phylogeny	Methylophaga alcalica sp. nov., a novel alkaliphilic and moderately halophilic, obligately methylotrophic bacterium from an East Mongolian saline soda lake.	Doronina NV, Darmaeva TD, Trotsenko YA	Int J Syst Evol Microbiol	10.1099/ijs.0.02267-0	2003	*

References

#5616

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14953

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#81121

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100768.1 )

* These data were automatically processed and therefore are not curated

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