Name: Mesorhizobium huakuii 103
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11886

Type strain:

Species: Mesorhizobium huakuii

Strain Designation: 103

Culture col. no.: DSM 6573, ATCC 51122, CCBAU 2609, IAM 14158, JCM 21036, HAMBI 1674, HAMBI 2035, IFO 15243, LMG 14107, NBRC 15243, OUT 30007

Strain history: IAM 14158 <-- W. X. Chen CCBAU 2609.

NCBI tax ID(s): 28104 (species)

Section

Mesorhizobium huakuii 103 is a mesophilic bacterium that was isolated from root nodules of Astragalus sinicus.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Mesorhizobium*
	Species	**Mesorhizobium huakuii**
	Full Scientific Name (PNU)	Mesorhizobium huakuii (Chen et al. 1991) Jarvis et al. 1997

Synonym

Rhizobium huakuii

Information on morphological and physiological properties Morphology

[Ref.: #2734]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2734]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #2734]

Culture medium growth

[Ref.: #2734]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2734]

Culture medium composition

expand / minimize

[Ref.: #33770]

Culture medium

MEDIUM 296 - for Rhizobium

[Ref.: #33770]

Culture medium growth

[Ref.: #33770]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #2734]	growth	30 °C
[Ref.: #33770]	growth	30 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #2734]	Temperature range	mesophilic
[Ref.: #33770]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #2734]	catalase	+	1.11.1.6
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #2734]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #2734]	20971	-	-	-	-	+	+	-	+	+	+	+	+	+	+	-	-	-	+	-	-	+
[Ref.: #2734]	20970	-	-	-	-	+/-	+	-	+	+	+	+	+	+	+	-	-	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2734]	Sample type/isolated from	root nodules of Astragalus sinicus
[Ref.: #2734]	Host species	Astragalus sinicus
[Ref.: #2734]	Country	China
[Ref.: #2734]	Country ISO 3 Code	CHN
[Ref.: #2734]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Root nodules of Astragalus sinicus
[Ref.: #67770]	Host species	Astragalus sinicus
[Ref.: #67770]	Geographic location (country and/or sea, region)	Nanjing
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_116706 (>99% sequence identity) for Mesorhizobium from Microbeatlas

Aquatic Samples	8865
Soil Samples	28701
Animal Samples	7451
Plant Samples	4030
Total Samples	49047

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2734]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Mesorhizobium huakuii strain CCBAU 2609 16S ribosomal RNA gene, partial sequence	FJ491264	1317	ENA	28104 tax ID	*
[Ref.: #20218]	16S rRNA [Rhizobium huakuii, CCBAU2609T, Genomic, 260 nt]	S74905	260	ENA	28104 tax ID	*
[Ref.: #20218]	Mesorhizobium huakuii gene for 16S rRNA, strain: IAM 14158	D12797	1438	ENA	28104 tax ID	*
[Ref.: #20218]	Mesorhizobium huakuii gene for 16S rRNA, complete sequence, type strain: IFO 15243	D13431	1443	ENA	28104 tax ID	*
[Ref.: #20218]	Mesorhizobium huakuii strain LMG 14107 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence	AF345259	857	ENA	28104 tax ID	*
[Ref.: #20218]	Mesorhizobium huakuii gene for 16S rRNA, partial sequence, strain: NBRC 15243	AB680816	1410	ENA	28104 tax ID	*
[Ref.: #20218]	Mesorhizobium huakuii strain USDA 4779 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	HQ143397	930	ENA	28104 tax ID	*
[Ref.: #2734]	Mesorhizobium huakuii strain CCBAU 2609 16S ribosomal RNA, partial sequence	NR_116706	1317	GenBank	28104 tax ID

Availability in culture collections External links

[Ref.: #2734]

Culture collection no.

DSM 6573, ATCC 51122, CCBAU 2609, IAM 14158, JCM 21036, HAMBI 1674, HAMBI 2035, IFO 15243, LMG 14107, NBRC 15243, OUT 30007

[Ref.: #20218]

Associated Passport(s) in StrainInfo

42273, 42269, 42271, 42274

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Structure of the O-specific polysaccharide of Mesorhizobium huakuii IFO15243T.	Choma A, Sowinski P, Mayer H	Carbohydr Res	10.1016/s0008-6215(00)00180-4	2000	*
Phylogeny	Lipopolysaccharides from Mesorhizobium huakuii and Mesorhizobium ciceri: chemical and immunological comparative data.	Choma A	Acta Biochim Pol	0249041043	2002	*
Metabolism	Characterization of Mesorhizobium huakuii lipid A containing both D-galacturonic acid and phosphate residues.	Choma A, Sowinski P	Eur J Biochem	10.1111/j.1432-1033.2004.04038.x	2004	*
Phylogeny	Revision of the taxonomic status of type strains of Mesorhizobium loti and reclassification of strain USDA 3471T as the type strain of Mesorhizobiumerdmanii sp. nov. and ATCC 33669T as the type strain of Mesorhizobiumjarvisii sp. nov.	Martinez-Hidalgo P, Ramirez-Bahena MH, Flores-Felix JD, Rivas R, Igual JM, Mateos PF, Martinez-Molina E, Leon-Barrios M, Peix A, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.000164	2015	*
Phylogeny	Mesorhizobium waimense sp. nov. isolated from Sophora longicarinata root nodules and Mesorhizobium cantuariense sp. nov. isolated from Sophora microphylla root nodules.	De Meyer SE, Wee Tan H, Heenan PB, Andrews M, Willems A	Int J Syst Evol Microbiol	10.1099/ijsem.0.000430	2015	*
Metabolism	Rhizobium strains differ considerably in outer membrane permeability and polymyxin B resistance.	Komaniecka I, Zamlynska K, Zan R, Staszczak M, Pawelec J, Seta I, Choma A	Acta Biochim Pol	10.18388/abp.2015_1212	2016	*
Phylogeny	Mesorhizobium carmichaelinearum sp. nov., isolated from Carmichaelineae spp. root nodules.	De Meyer SE, Andrews M, James EK, Willems A	Int J Syst Evol Microbiol	10.1099/ijsem.0.003120	2018	*
	Synthesis of the 6-deoxytalose-containing tri- and hexasaccharides of the O-antigen polysaccharide from Mesorhizobium huakuii IFO15243T.	Zong G, Feng Y, Liang X, Chen L, Zhang J, Wang D	Carbohydr Res	10.1016/j.carres.2010.07.023	2010	*
	Symbiotic Performances of Three Mesorhizobium huakuii Strains Inoculated to Chinese Milk Vetch Varieties.	Liu F, Yi M, Liu X, Shen Y, Li J, Wang H, Yang D, Sun Z	Front Plant Sci	10.3389/fpls.2020.599400	2020	*

References

#2734

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6573

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33770 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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