Mesorhizobium huakuii 103 is a Gram-negative, motile, rod-shaped bacterium that was isolated from root nodules of Astragalus sinicus.
Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Alphaproteobacteria |
| Order Hyphomicrobiales |
| Family Phyllobacteriaceae |
| Genus Mesorhizobium |
| Species Mesorhizobium huakuii |
| Full scientific name Mesorhizobium huakuii (Chen et al. 1991) Jarvis et al. 1997 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 2734 | RHIZOBIUM MEDIUM (DSMZ Medium 98) | Medium recipe at MediaDive | Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water | ||
| 33770 | MEDIUM 296 - for Rhizobium | Distilled water make up to (800.000 ml);Agar (15.000 g);Yeast extract (1.000 g);Mannitol (10.000 g);Earth extract - M0541 (200.000 ml) | |||
| 119978 | CIP Medium 296 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 119978 | 16947 ChEBI | citrate | + | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | - | builds acid from | from API 50CH acid |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68369 | 16899 ChEBI | D-mannitol | + | assimilation | from API 20NE |
| 68371 | 16024 ChEBI | D-mannose | - | builds acid from | from API 50CH acid |
| 68369 | 16024 ChEBI | D-mannose | + | assimilation | from API 20NE |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68369 | 27689 ChEBI | decanoate | - | assimilation | from API 20NE |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 119978 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68369 | 4853 ChEBI | esculin | + | hydrolysis | from API 20NE |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68369 | 24265 ChEBI | gluconate | - | assimilation | from API 20NE |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 119978 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68369 | 30849 ChEBI | L-arabinose | + | assimilation | from API 20NE |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 68369 | 17306 ChEBI | maltose | + | assimilation | from API 20NE |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 68369 | 59640 ChEBI | N-acetylglucosamine | + | assimilation | from API 20NE |
| 119978 | 17632 ChEBI | nitrate | - | reduction | |
| 119978 | 17632 ChEBI | nitrate | - | respiration | |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 119978 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 119978 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 119978 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 119978 | amylase | - | ||
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 119978 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68369 | beta-glucosidase | + | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 119978 | caseinase | - | 3.4.21.50 | |
| 2734 | catalase | + | 1.11.1.6 | |
| 119978 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | + | 1.9.3.1 | from API 20NE |
| 2734 | cytochrome-c oxidase | + | 1.9.3.1 | |
| 119978 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 119978 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 119978 | gelatinase | - | ||
| 68369 | gelatinase | - | from API 20NE | |
| 119978 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 119978 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 119978 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 119978 | ornithine decarboxylase | - | 4.1.1.17 | |
| 119978 | oxidase | + | ||
| 119978 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 119978 | tryptophan deaminase | - | ||
| 119978 | tween esterase | - | ||
| 119978 | urease | + | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119978 | not determinedn.d. | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) | |
| #Host Body-Site | #Plant | #Root nodule |
Global distribution of 16S sequence NR_116706 (>99% sequence identity) for Mesorhizobium from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 124043 | ASM3016023v1 assembly for Mesorhizobium huakuii NBRC 15243 | scaffold | 28104 | 59.62 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Mesorhizobium huakuii strain CCBAU 2609 16S ribosomal RNA gene, partial sequence | FJ491264 | 1317 | 28104 | ||
| 20218 | 16S rRNA [Rhizobium huakuii, CCBAU2609T, Genomic, 260 nt] | S74905 | 260 | 28104 | ||
| 20218 | Mesorhizobium huakuii gene for 16S rRNA, strain: IAM 14158 | D12797 | 1438 | 28104 | ||
| 20218 | Mesorhizobium huakuii gene for 16S rRNA, complete sequence, type strain: IFO 15243 | D13431 | 1443 | 28104 | ||
| 20218 | Mesorhizobium huakuii strain LMG 14107 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence | AF345259 | 857 | 28104 | ||
| 20218 | Mesorhizobium huakuii gene for 16S rRNA, partial sequence, strain: NBRC 15243 | AB680816 | 1410 | 28104 | ||
| 20218 | Mesorhizobium huakuii strain USDA 4779 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | HQ143397 | 930 | 28104 | ||
| 2734 | Mesorhizobium huakuii strain CCBAU 2609 16S ribosomal RNA, partial sequence | NR_116706 | 1317 | 28104 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Screening and Application of Highly Efficient Rhizobia for Leguminous Green Manure Astragalus sinicus in Lyophilized Inoculants and Seed Coating | Xue D, Chen W, Yang G, Li Y, Zhang J. | Plants (Basel) | 2025 | |||
| Phylogeny | Genetic diversity and host range of rhizobia nodulating Lotus tenuis in typical soils of the Salado River Basin (Argentina). | Estrella MJ, Munoz S, Soto MJ, Ruiz O, Sanjuan J. | Appl Environ Microbiol | 10.1128/aem.02405-08 | 2009 | |
| Symbiotic Performances of Three Mesorhizobium huakuii Strains Inoculated to Chinese Milk Vetch Varieties. | Liu F, Yi M, Liu X, Shen Y, Li J, Wang H, Yang D, Sun Z | Front Plant Sci | 10.3389/fpls.2020.599400 | 2020 | ||
| Metabolism | Rhizobium strains differ considerably in outer membrane permeability and polymyxin B resistance. | Komaniecka I, Zamlynska K, Zan R, Staszczak M, Pawelec J, Seta I, Choma A | Acta Biochim Pol | 10.18388/abp.2015_1212 | 2016 | |
| Synthesis of the 6-deoxytalose-containing tri- and hexasaccharides of the O-antigen polysaccharide from Mesorhizobium huakuii IFO15243T. | Zong G, Feng Y, Liang X, Chen L, Zhang J, Wang D | Carbohydr Res | 10.1016/j.carres.2010.07.023 | 2010 | ||
| Metabolism | Characterization of Mesorhizobium huakuii lipid A containing both D-galacturonic acid and phosphate residues. | Choma A, Sowinski P | Eur J Biochem | 10.1111/j.1432-1033.2004.04038.x | 2004 | |
| Phylogeny | Lipopolysaccharides from Mesorhizobium huakuii and Mesorhizobium ciceri: chemical and immunological comparative data. | Choma A | Acta Biochim Pol | 0249041043 | 2002 | |
| Genetics | Structure of the O-specific polysaccharide of Mesorhizobium huakuii IFO15243T. | Choma A, Sowinski P, Mayer H | Carbohydr Res | 10.1016/s0008-6215(00)00180-4 | 2000 | |
| Phylogeny | Mesorhizobium retamae sp. nov., a novel non-nodulating and non-nitrogen-fixing species isolated from the root nodules of Retama raetam sampled in Tunisia. | Ben Gaied R, Sbissi I, Tarhouni M, Huber K, Wolf J, Neumann-Schaal M, Nouioui I, Ghodhbane-Gtari F, Gtari M. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006478 | 2024 | |
| Mesorhizobium liriopis sp. nov., isolated from the fermented fruit of Liriope platyphylla a medicinal plant. | Kim I, Chhetri G, So Y, Park S, Jung Y, Woo H, Seo T. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006086 | 2023 | ||
| Phylogeny | Mesorhizobium carmichaelinearum sp. nov., isolated from Carmichaelineae spp. root nodules. | De Meyer SE, Andrews M, James EK, Willems A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003120 | 2018 | |
| Phylogeny | Mesorhizobium waimense sp. nov. isolated from Sophora longicarinata root nodules and Mesorhizobium cantuariense sp. nov. isolated from Sophora microphylla root nodules. | De Meyer SE, Wee Tan H, Heenan PB, Andrews M, Willems A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000430 | 2015 | |
| Phylogeny | Revision of the taxonomic status of type strains of Mesorhizobium loti and reclassification of strain USDA 3471T as the type strain of Mesorhizobiumerdmanii sp. nov. and ATCC 33669T as the type strain of Mesorhizobiumjarvisii sp. nov. | Martinez-Hidalgo P, Ramirez-Bahena MH, Flores-Felix JD, Rivas R, Igual JM, Mateos PF, Martinez-Molina E, Leon-Barrios M, Peix A, Velazquez E | Int J Syst Evol Microbiol | 10.1099/ijs.0.000164 | 2015 |
| #2734 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6573 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #33770 | ; Curators of the CIP; |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68369 | Automatically annotated from API 20NE . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #119978 | Collection of Institut Pasteur ; Curators of the CIP; CIP 107328 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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