Name: Desulfitobacterium dehalogenans JW/IU-DC1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11762

Type strain:

Species: Desulfitobacterium dehalogenans

Strain Designation: JW/IU-DC1

Culture col. no.: DSM 9161, ATCC 51507

Strain history: <- J. Wiegel; JW/IU-DC1 <- I. Utkin and J. Wiegel {1993}

NCBI tax ID(s): 756499 (strain), 36854 (species)

SI-ID 43024

ATCC 51507, DSM 9161

Section

Desulfitobacterium dehalogenans JW/IU-DC1 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from freshwater pond sediment.

motile
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Desulfitobacteriaceae*
	Genus	*Desulfitobacterium*
	Species	**Desulfitobacterium dehalogenans**
	Full Scientific Name (LPSN)	Desulfitobacterium dehalogenans Utkin et al. 1994

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %95.915

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3497]

Culture medium

DESULFITOBACTERIUM HAFNIENSE MEDIUM (DSMZ Medium 720)

[Ref.: #3497]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #3497]

Culture medium composition

expand / minimize

[Ref.: #3497]

Culture medium

DESULFITOBACTERIUM MEDIUM (DSMZ Medium 663)

[Ref.: #3497]

Culture medium growth

[Ref.: #3497]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3497]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3497]			growth	37 °C

[Ref.: #3497]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3497]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.323

[Ref.: #69481]	Ability of spore formation	yes Confidence in %93
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3497]	Sample type/isolated from	freshwater pond sediment
[Ref.: #3497]	Geographic location (country and/or sea, region)	Athens, Ga., Sandy Creek Nature Park
[Ref.: #3497]	Country	USA
[Ref.: #3497]	Country ISO 3 Code	USA
[Ref.: #3497]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3497]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3497]	Desulfitobacterium dehalogenans 16S ribosomal RNA	L28946	1514	ENA	756499 tax ID
[Ref.: #20218]	Desulfitobacterium dehalogenans strain DSM 9161 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	DQ834677	662	ENA	756499 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfitobacterium dehalogenans ATCC 51507	GCA_000243155	complete	GenBank	756499 tax ID	*
[Ref.: #66792]	Desulfitobacterium dehalogenans ATCC 51507	756499.4	wgs	PATRIC	756499 tax ID	*
[Ref.: #66792]	Desulfitobacterium dehalogenans JW/IU-DC1, ATCC 51507	2507262031	complete	JGI IMG/M	756499 tax ID	*

[Ref.: #3497]	GC-content	44 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #3497]	GC-content	45 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfitobacterium dehalogenans ATCC 51507 ATCC 51507 NCBI: GCA_000243155.3
[Ref.: #69481]	spore-forming	yes	93	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfitobacterium dehalogenans ATCC 51507 ATCC 51507 NCBI: GCA_000243155.3
[Ref.: #69480]	motile	yes	86.371	no
[Ref.: #69480]	flagellated	no	73.029	no
[Ref.: #69480]	gram-positive	no	80.887	no
[Ref.: #69480]	anaerobic	yes	97.524	yes
[Ref.: #69480]	aerobic	no	97.139	yes
[Ref.: #69480]	halophile	no	95.05	no
[Ref.: #69480]	spore-forming	yes	94.834	no
[Ref.: #69480]	thermophile	no	99.059	yes
[Ref.: #69480]	glucose-util	yes	58.827	no
[Ref.: #69480]	glucose-ferment	no	80.84	no

Availability in culture collections External links

[Ref.: #3497]

Culture collection no.

DSM 9161, ATCC 51507

[Ref.: #80980]

SI-ID 43024

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic, proteomic, and biochemical analysis of the organohalide respiratory pathway in Desulfitobacterium dehalogenans.	Kruse T, van de Pas BA, Atteia A, Krab K, Hagen WR, Goodwin L, Chain P, Boeren S, Maphosa F, Schraa G, de Vos WM, van der Oost J, Smidt H, Stams AJ	J Bacteriol	10.1128/JB.02370-14	2014	*
Metabolism	Energy yield of respiration on chloroaromatic compounds in Desulfitobacterium dehalogenans.	van de Pas BA, Jansen S, Dijkema C, Schraa G, de Vos WM, Stams AJ	Appl Environ Microbiol	10.1128/AEM.67.9.3958-3963.2001	2001	*
Phylogeny	Isolation and characterization of Desulfitobacterium frappieri sp. nov., an anaerobic bacterium which reductively dechlorinates pentachlorophenol to 3-chlorophenol.	Bouchard B, Beaudet R, Villemur R, McSween G, Lepine F, Bisaillon JG	Int J Syst Bacteriol	10.1099/00207713-46-4-1010	1996	*
Metabolism	Specificity of reductive dehalogenation of substituted ortho-chlorophenols by Desulfitobacterium dehalogenans JW/IU-DC1.	Utkin I, Dalton DD, Wiegel J	Appl Environ Microbiol	10.1128/aem.61.1.346-351.1995	1995	*
Phylogeny	Isolation and characterization of Desulfitobacterium dehalogenans gen. nov., sp. nov., an anaerobic bacterium which reductively dechlorinates chlorophenolic compounds.	Utkin I, Woese C, Wiegel J	Int J Syst Bacteriol	10.1099/00207713-44-4-612	1994	*
	Specificity of Reductive Dehalogenation of Substituted ortho-Chlorophenols by Desulfitobacterium dehalogenans JW/IU-DC1.	Utkin I, Dalton DD, Wiegel J	Appl Environ Microbiol	10.1128/aem.61.4.1677-1677c.1995	1995	*

References

#3497

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9161

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80980

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43024.1 )

* These data were automatically processed and therefore are not curated

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Desulfitobacterium dehalogenans ATCC 51507 ATCC 51507

Desulfitobacterium dehalogenans ATCC 51507 ATCC 51507

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